Alignments for a candidate for ilvC in Bifidobacterium longum NCC2705

Align ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_007051650.1 BL_RS06430 ketol-acid reductoisomerase

Query= BRENDA::Q9FBT8
         (332 letters)



>NCBI__GCF_000007525.1:WP_007051650.1
          Length = 350

 Score =  381 bits (978), Expect = e-110
 Identities = 191/326 (58%), Positives = 239/326 (73%), Gaps = 2/326 (0%)

Query: 2   AELFYDADADLSIIQGRKVAVIGYGSQGHAHALSLRDSGVDVRVGLHEGSKSKAKAEEQG 61
           A+++Y+ D DLS+++G+KVA+IGYGSQGHAHAL+LRDSGVDV VGL   SKS   A+EQG
Sbjct: 3   AQIWYENDGDLSVLEGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVDFAKEQG 62

Query: 62  LRVVPVAEAAAEADVIMILVPDPIQAEVYEKDIKDNLKDGDALFFGHGLNIRYGFVKPPA 121
           L V  VAEA+AEADVIMIL PD  Q  ++  DI+ N+K G A+ F HG NI YG++KP  
Sbjct: 63  LEVKSVAEASAEADVIMILAPDQYQRTIWANDIEPNIKPGAAVAFAHGFNIHYGYIKPSE 122

Query: 122 GVDVCMVAPKGPGHLVRRQYEEGRGVPCLVAVEQDATGNAFALALSYAKGIGGTRAGVIR 181
              V MVAPKGPGH+VRR+Y  GRGVP +VAVEQD  G+ +AL L+YAK +G  RAG I+
Sbjct: 123 DHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPRGDGWALTLAYAKALGALRAGAIK 182

Query: 182 TTFTEETETDLFGEQAVLAGGVTALVKAGFETLTEAGYQPEIAYFECLHELKLIVDLMYE 241
           TTF EETETDLFGEQ VL GGV  LV+ GFE LT+AGYQPEIAYFE  HELK++VDLM E
Sbjct: 183 TTFKEETETDLFGEQNVLMGGVNKLVEMGFEVLTDAGYQPEIAYFEVCHELKMLVDLMNE 242

Query: 242 GGLEKMRWSISETAEWGDYVTGPRIITDVTKAEMRKVLAEIQDGTFAKNWMDEYHGGLKK 301
           GGL K RWS S+TA++GDYV    +I +  +  M   L  IQDG+FAK ++D+   G   
Sbjct: 243 GGLNKARWSCSDTAQYGDYVN--TVINEDCRKRMEYHLQRIQDGSFAKEFIDDQDAGAPH 300

Query: 302 YNEYKKQDSEHLLETTGKELRKLMSW 327
           + E +++ S   +ET G +LR + SW
Sbjct: 301 FKELQEKYSNERIETVGPKLRAMFSW 326


Lambda     K      H
   0.316    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 376
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 350
Length adjustment: 28
Effective length of query: 304
Effective length of database: 322
Effective search space:    97888
Effective search space used:    97888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_007051650.1 BL_RS06430 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.17795.in -d ../tmp/NCBI__GCF_000007525.1/orgs.faa -p T > /tmp/gapView.17795.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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