Alignments for a candidate for leuC in Bifidobacterium longum NCC2705

Align 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate WP_007053084.1 BL_RS07825 3-isopropylmalate dehydratase large subunit

Query= SwissProt::P58946
         (481 letters)



>NCBI__GCF_000007525.1:WP_007053084.1
          Length = 467

 Score =  662 bits (1709), Expect = 0.0
 Identities = 322/468 (68%), Positives = 383/468 (81%), Gaps = 5/468 (1%)

Query: 15  TLAEKVWRDHVVSKGENGEPDLLYIDLQLLHEVTSPQAFDGLRMTGRKLRHPELHLATED 74
           TLAEKVW DH+V KG +G PDLLYIDL L+HEVTSPQAF+GLR+ GRK RH +  +ATED
Sbjct: 4   TLAEKVWADHLVRKGSDGAPDLLYIDLMLMHEVTSPQAFEGLRLAGRKPRHVDQLIATED 63

Query: 75  HNVPTEGIKTGSLLEINDKISRLQVSTLRDNCEEFGVRLHPMGDVRQGIVHTVGPQLGAT 134
           HN PT  I   +     D+ S LQ++TL  NC+EFGVRLHP+GD  QGIVH   P LG T
Sbjct: 64  HNTPTVDIDRPN----PDETSALQLTTLEKNCKEFGVRLHPLGDADQGIVHAFAPILGLT 119

Query: 135 QPGMTIVCGDSHTSTHGAFGSMAFGIGTSEVEHVMATQTLPLKPFKTMAIEVTGELQPGV 194
           QPGMTIVCGDSHTSTHGAFG++AFGIGTSEVEHVMATQTL LKPFKTMA+ V G+L    
Sbjct: 120 QPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVMATQTLSLKPFKTMAVNVNGKLPADA 179

Query: 195 SSKDLILAIIAKIGTGGGQGYVLEYRGEAIRKMSMDARMTMCNMSIEAGARAGMIAPDQT 254
           ++KD+ILAIIAKIGTGGGQGYV+EYRGEAIR ++MD RMT+CNMSIEAGARAGMIAPD+T
Sbjct: 180 TAKDIILAIIAKIGTGGGQGYVIEYRGEAIRNLTMDERMTVCNMSIEAGARAGMIAPDET 239

Query: 255 TFDYVEGREMAPKGADWDEAVAYWKTLPTDEGATFDKVVEIDGSALTPFITWGTNPGQGL 314
           TF+Y++GR  AP+G  WD+AVAYWKTL TD+ A FDKVV+ID + L P++TWGTNPGQGL
Sbjct: 240 TFEYLKGRPHAPEGELWDQAVAYWKTLKTDDDAVFDKVVDIDATKLGPYVTWGTNPGQGL 299

Query: 315 PLGESVPSPEDFTNDNDKAAAEKALQYMDLVPGTPLRDIKIDTVFLGSCTNARIEDLQIA 374
           P+  SVP P    +   +AAAE+A+ YM L PG P++DI +DTVF+GSCTN RI+DL+ A
Sbjct: 300 PITASVPEPGKIADATKRAAAERAITYMGLKPGMPIKDIAVDTVFIGSCTNGRIDDLRQA 359

Query: 375 ADILKGHKIADGM-RMMVVPSSTWIKQEAEALGLDKIFTDAGAEWRTAGCSMCLGMNPDQ 433
           A I+KGH+ A+ + R++VVP+S+ ++ +AE  GLDK+F D GAEWR AGCSMCLGMNPD+
Sbjct: 360 AAIMKGHRKAENIHRVLVVPASSRVRLQAEKEGLDKVFKDFGAEWRNAGCSMCLGMNPDK 419

Query: 434 LKPGERSASTSNRNFEGRQGPGGRTHLVSPAVAAATAIRGTLSSPADI 481
           L P ERS STSNRNFEGRQG G RTHL SPAVAAATAIRGT+SSPAD+
Sbjct: 420 LVPNERSISTSNRNFEGRQGKGSRTHLASPAVAAATAIRGTISSPADL 467


Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 789
Number of extensions: 29
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 467
Length adjustment: 33
Effective length of query: 448
Effective length of database: 434
Effective search space:   194432
Effective search space used:   194432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_007053084.1 BL_RS07825 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.19330.in -d ../tmp/NCBI__GCF_000007525.1/orgs.faa -p T > /tmp/gapView.19330.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.