Alignments for a candidate for dapA in Bifidobacterium longum NCC2705

Align 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 (characterized)
to candidate WP_007053723.1 BL_RS04575 4-hydroxy-tetrahydrodipicolinate synthase

Query= SwissProt::P9WP25
         (300 letters)



>NCBI__GCF_000007525.1:WP_007053723.1
          Length = 301

 Score =  244 bits (624), Expect = 1e-69
 Identities = 134/293 (45%), Positives = 190/293 (64%), Gaps = 4/293 (1%)

Query: 9   AARLGTLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIE 68
           +A  G +L AMVTP   DGS+D A A +LA +LV  G DGLVV+GTTGESP T   EK+E
Sbjct: 11  SAPFGRILPAMVTPMKSDGSVDFAAAQKLAKYLVADGADGLVVNGTTGESPVTHMDEKVE 70

Query: 69  LLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAH 128
           L+RAV E V     VI+GAG+ DTAH++R+ +     GA  +LVV PYYS+P Q G+  H
Sbjct: 71  LVRAVKEVVD--VPVISGAGSNDTAHTVRMVEQTQEAGADAVLVVMPYYSRPSQDGIVGH 128

Query: 129 FTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKDAKADLHSGAQIMADTG 188
           + AV ++ E P+++YD+PGR+ + ++  T   LA   ++  VKDA  DL +  +    TG
Sbjct: 129 YKAVDESAEKPIIVYDVPGRTGLKVKVGTYDRLAELEHVKAVKDATGDLAAAVEKQQRTG 188

Query: 189 LAYYSGDDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLC 248
           LA+YSGDD L LP+L++GA G ISVIAH+A+  +++L+ AF  GDI TAR++   +APL 
Sbjct: 189 LAWYSGDDGLFLPFLSIGAVGIISVIAHVASNPMQQLVQAFDRGDITTARRLANQLAPLV 248

Query: 249 NAMSRLG-GVTLSKAGLRLQG-IDVGDPRLPQVAATPEQIDALAADMRAASVL 299
           +A++  G    ++KA L+++G I     RLP +     Q+D     MRAA +L
Sbjct: 249 HALNGDGYQAVMAKAALKVKGVIPSTTMRLPNIGPDATQLDKAEEGMRAAGLL 301


Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 276
Number of extensions: 13
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 301
Length adjustment: 27
Effective length of query: 273
Effective length of database: 274
Effective search space:    74802
Effective search space used:    74802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_007053723.1 BL_RS04575 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.28242.in -d ../tmp/NCBI__GCF_000007525.1/orgs.faa -p T > /tmp/gapView.28242.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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