Alignments for a candidate for proC in Bifidobacterium longum NCC2705

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_008783010.1 BL_RS03170 pyrroline-5-carboxylate reductase

Query= SwissProt::P27771
         (263 letters)



>NCBI__GCF_000007525.1:WP_008783010.1
          Length = 266

 Score =  198 bits (504), Expect = 8e-56
 Identities = 110/260 (42%), Positives = 157/260 (60%), Gaps = 6/260 (2%)

Query: 3   VGFLGFGAMGRALAEGLVHAGALQAAQVYACALNQEKLRAQCTSLGIGACASVQELVQKS 62
           +GF+G+G M +A+AEGLV AGA+  A + ACA + +KL      +G     +  E+V  S
Sbjct: 6   IGFIGYGNMAQAIAEGLVAAGAVDGADIVACAAHYDKLEKTTMKVGAKPLHNAAEVVAAS 65

Query: 63  EWIFLAVKPSQISTVLRD---RQSFQGKVLISLAAGMSCAAYEALFAADPHQGIRHLSL- 118
           + + +A+KP QI +V++      + + K ++S+AAG     Y  LF AD +    H+   
Sbjct: 66  DMVVIAIKPYQIESVIKPVIGAIADEDKFVVSIAAGWDLDKYRDLFGADFNAA--HIQCT 123

Query: 119 LPNLPCQVARGVIIAEARHTLHHDEHAALLAVLRTVAQVEVVDTAYFAIAGVIAGCAPAF 178
           +PN P  V +GV++ EA +TL   +      +  +++ +E VD+A+  I   IAGCAPAF
Sbjct: 124 IPNTPMAVGKGVLVTEADNTLTDTQAEVFERLFSSISLIERVDSAHMGIGMCIAGCAPAF 183

Query: 179 AAQFIEALADAGVRYGLARDQAYRLAAHMLEGTAALIQHSGVHPAQLKDRVCSPAGSTIR 238
              +IEAL DAGV+YGL R  AYRLAA M+EG  AL   +  HP  +KD VCSP G+TI+
Sbjct: 184 TDMYIEALGDAGVKYGLQRATAYRLAAKMVEGVGALYLKNETHPGVMKDAVCSPGGTTIK 243

Query: 239 GVLALEEQGLRRAVIHAVRA 258
           GV +LEE   R AVI AV A
Sbjct: 244 GVTSLEESAFRGAVIKAVDA 263


Lambda     K      H
   0.324    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 184
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 266
Length adjustment: 25
Effective length of query: 238
Effective length of database: 241
Effective search space:    57358
Effective search space used:    57358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_008783010.1 BL_RS03170 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.1765.in -d ../tmp/NCBI__GCF_000007525.1/orgs.faa -p T > /tmp/gapView.1765.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.