Alignments for a candidate for hisC in Cereibacter sphaeroides ATCC 17029

Align histidinol-phosphate aminotransferase [EC:2.6.1.9] (characterized)
to candidate WP_009564739.1 RSPH17029_RS04895 histidinol-phosphate transaminase

Query= reanno::Phaeo:GFF2492
         (361 letters)



>NCBI__GCF_000015985.1:WP_009564739.1
          Length = 361

 Score =  525 bits (1352), Expect = e-154
 Identities = 259/354 (73%), Positives = 288/354 (81%)

Query: 4   IAPQPGILDIALYEGGAAHVKGMSNVTKLSSNENPLGPSPKAIEAMQAAVSEMHRYPSSD 63
           I PQPGILDIALYEGG +HV G+ N  KLSSNENP GPSPKA EA   +V  +HRYPS+D
Sbjct: 5   IRPQPGILDIALYEGGKSHVAGIQNALKLSSNENPFGPSPKAKEAFLRSVHTLHRYPSTD 64

Query: 64  HSGLRQAIGEVYGLPMEQIICGAGSDEIITFLCQAYAGPGDEVLFTEHGFAMYRISALAA 123
           H+GLR AI EV+GL   ++ICG GSDEIITFLCQAYAGP  +V+FTEHGF MYRISALA 
Sbjct: 65  HAGLRHAIAEVHGLDPARVICGVGSDEIITFLCQAYAGPHTDVVFTEHGFLMYRISALAV 124

Query: 124 GATPVEVAERDRVTDVDALLAGCTERTRLVFIANPNNPTGTMIGMADLARLADGLPKGAL 183
           GA PVEV ER+R TDVDA+LA CT  TRLVF+ANPNNPTGTMIG ADLARLA GLP  A+
Sbjct: 125 GANPVEVPERERTTDVDAILAACTPHTRLVFLANPNNPTGTMIGQADLARLAAGLPAQAI 184

Query: 184 LVLDGAYAEYVEGYDAGAALVANRDNVVMTRTFSKIYGLGGARVGWGYAPKPIIDVLNRV 243
           LVLDGAYAEYV GYDAG AL+  R NVVMTRTFSKIYGLGG RVGWGY PK IIDVLNR+
Sbjct: 185 LVLDGAYAEYVPGYDAGRALIEERGNVVMTRTFSKIYGLGGLRVGWGYGPKAIIDVLNRI 244

Query: 244 RGPFNLSSTALAGAEAAVRDTDYTEHCRKENAKWRTWLAEALAELGVPSDTSCANFILAR 303
           RGPFNLS+T L  AEAAVRD D+   CR +NA+WR WLAEALAE+GVPSDTS ANFILAR
Sbjct: 245 RGPFNLSTTQLETAEAAVRDQDHVARCRADNARWRIWLAEALAEIGVPSDTSMANFILAR 304

Query: 304 FASPEEAGACDAFLQSRGLIVRRVTGYKLPAALRITVGDETACNALVAAMKVFK 357
           F+  EEA ACD  LQ++GLIVRRV GYKLP  LRIT+GDE +C  +  A+  FK
Sbjct: 305 FSDTEEAEACDLHLQTQGLIVRRVAGYKLPHCLRITIGDEASCRRVAHAIGQFK 358


Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 479
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 361
Length adjustment: 29
Effective length of query: 332
Effective length of database: 332
Effective search space:   110224
Effective search space used:   110224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_009564739.1 RSPH17029_RS04895 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.5342.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.5342.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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