Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_011316359.1 AVA_RS26310 dihydroxy-acid dehydratase
Query= metacyc::MONOMER-18815 (557 letters) >NCBI__GCF_000204075.1:WP_011316359.1 Length = 562 Score = 780 bits (2014), Expect = 0.0 Identities = 390/557 (70%), Positives = 467/557 (83%) Query: 1 MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60 M+ N RSQ +TQGV RSPNR+M A+G+K EDF+K +VGIANG+STITPCN G+ +LA Sbjct: 1 MSENLRSQIVTQGVQRSPNRAMLRAVGFKDEDFNKAIVGIANGYSTITPCNMGINQLALR 60 Query: 61 AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120 A IK++ A PQ+FGT TISDG+SMGTEGMKYSL+SREVIAD IETA GQ MDGV+ I Sbjct: 61 AEVGIKSAGAMPQMFGTITISDGISMGTEGMKYSLVSREVIADSIETACTGQSMDGVLAI 120 Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180 GGCDKNMPG M+A+AR N+P I+VYGGTIKPG++ G+DLT+VSSFEAVG+++AG++ ++ Sbjct: 121 GGCDKNMPGAMLAIARMNIPAIFVYGGTIKPGHYNGRDLTVVSSFEAVGQYSAGKIDDKE 180 Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240 VE +ACP GSCGGM+TANTMS +FEALGMSL YSSTMA D EK DS +SA VLV Sbjct: 181 LLEVESHACPGAGSCGGMFTANTMSGAFEALGMSLPYSSTMAAEDAEKADSTEKSAFVLV 240 Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300 EAI++ I P IIT KSIENA+++IMA GGSTNAVLH+LAIAHAA VE T+DDFE IR + Sbjct: 241 EAIRKQILPSQIITCKSIENAISVIMAVGGSTNAVLHFLAIAHAANVELTLDDFETIRAR 300 Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360 VPV+C+LKPSG+YVATDLH+AGGIPQVMK+LL +LHGDCLTITG+T+AE L ++P+ P Sbjct: 301 VPVLCDLKPSGKYVATDLHEAGGIPQVMKMLLVHDLLHGDCLTITGQTIAEILADIPEEP 360 Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420 +QDVI +Y +GHLAIL+GNLA EGAVAKITG+K PVITG ARVFE E+++++A Sbjct: 361 SVNQDVIRTWNNPMYPQGHLAILRGNLATEGAVAKITGVKKPVITGTARVFESEEASLDA 420 Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480 ILA KI AGDILV+RY GPKGGPGM EMLAPTSAIIG GLG++VG ITDGRFSGGT+GMV Sbjct: 421 ILAGKIQAGDILVIRYEGPKGGPGMREMLAPTSAIIGAGLGDAVGLITDGRFSGGTYGMV 480 Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540 VGHVAPEA VGG IALV+EGDSITIDA LLQLN++D ELARR ANW+ P PRYT+GVL Sbjct: 481 VGHVAPEAAVGGAIALVEEGDSITIDAPARLLQLNISDHELARRHANWQPPVPRYTKGVL 540 Query: 541 AKFSKLASTASKGAVTD 557 AK++KL S++S GAVTD Sbjct: 541 AKYAKLVSSSSLGAVTD 557 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1030 Number of extensions: 35 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 557 Length of database: 562 Length adjustment: 36 Effective length of query: 521 Effective length of database: 526 Effective search space: 274046 Effective search space used: 274046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate WP_011316359.1 AVA_RS26310 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.6161.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6161.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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