Alignments for a candidate for ilvD in Trichormus variabilis ATCC 29413

Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_011316921.1 AVA_RS00115 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-18815
         (557 letters)



>NCBI__GCF_000204075.1:WP_011316921.1
          Length = 563

 Score =  801 bits (2068), Expect = 0.0
 Identities = 395/557 (70%), Positives = 468/557 (84%)

Query: 1   MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60
           M+ N RS+ ITQGV RSPNR+M  A+G++  DF K +VG+ANG+STITPCN G+ +LA  
Sbjct: 1   MSENLRSKAITQGVQRSPNRAMLRAVGFQDADFTKAIVGVANGYSTITPCNMGINQLAQR 60

Query: 61  AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120
           A   I  + A PQ+FGT TISDG+SMGTEGMKYSL+SREVIAD IET   GQ +DGV+ I
Sbjct: 61  AEAGINRAGAKPQIFGTITISDGISMGTEGMKYSLVSREVIADSIETVCNGQSLDGVIAI 120

Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180
           GGCDKNMPG MIA+AR N+P I+VYGGTIKPG++ GKDLT+VSSFEAVGE++AG++ + +
Sbjct: 121 GGCDKNMPGAMIAIARMNIPAIFVYGGTIKPGHYNGKDLTVVSSFEAVGEYSAGKIDENE 180

Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240
              VE+NACP  GSCGGMYTANTMSS+FEALGMSL YSSTMA  D EK DS  ESA+VLV
Sbjct: 181 LLAVERNACPGAGSCGGMYTANTMSSAFEALGMSLPYSSTMAAEDDEKADSTEESAKVLV 240

Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300
           EAI+  + PR IITRKSIENA+A+IMA GGSTNAVLH+LAIA AA VE  +DDFE IR +
Sbjct: 241 EAIRHQLLPRQIITRKSIENAIAVIMAVGGSTNAVLHFLAIARAAGVELNLDDFETIRGR 300

Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360
           VPV+C+LKPSG+YVATDLHKAGGIPQVMK+LL  G+LHGDC+TITG+T+AE L ++P+ P
Sbjct: 301 VPVLCDLKPSGRYVATDLHKAGGIPQVMKMLLVHGLLHGDCITITGKTIAEVLADIPEEP 360

Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420
             +QDVI P  K +YA+GHLAILKGNLA EGAVAKITG+KNPVITGPA+VFE E+  ++A
Sbjct: 361 SPNQDVIRPWNKPMYAQGHLAILKGNLATEGAVAKITGVKNPVITGPAKVFESEEDCLDA 420

Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480
           ILA KI AGD++V+RY GPKGGPGM EMLAPTSAIIG GLG+SVG ITDGRFSGGT+GMV
Sbjct: 421 ILAGKIKAGDVIVVRYEGPKGGPGMREMLAPTSAIIGAGLGDSVGLITDGRFSGGTYGMV 480

Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540
           VGHVAPEA VGG IALVQEGDSITIDAH   LQLN++DEELA RRANW+   PRYT+G+L
Sbjct: 481 VGHVAPEAAVGGAIALVQEGDSITIDAHTRSLQLNISDEELAHRRANWQPRPPRYTKGIL 540

Query: 541 AKFSKLASTASKGAVTD 557
           AK++KL +++S GAVTD
Sbjct: 541 AKYAKLVASSSVGAVTD 557


Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1069
Number of extensions: 41
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 563
Length adjustment: 36
Effective length of query: 521
Effective length of database: 527
Effective search space:   274567
Effective search space used:   274567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate WP_011316921.1 AVA_RS00115 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.21436.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21436.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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