Alignments for a candidate for argB in Trichormus variabilis ATCC 29413

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_011317428.1 AVA_RS02805 acetylglutamate kinase

Query= BRENDA::Q6V1L5
         (301 letters)



>NCBI__GCF_000204075.1:WP_011317428.1
          Length = 297

 Score =  435 bits (1118), Expect = e-127
 Identities = 215/290 (74%), Positives = 251/290 (86%)

Query: 4   EFIEAGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMR 63
           E+I    A RV++LSEALPY+QQFAGRTVVVKYGGAAMK   LK+ V+RDIVFL+CVG+R
Sbjct: 7   EYIRQAEATRVQVLSEALPYIQQFAGRTVVVKYGGAAMKDSHLKDQVIRDIVFLSCVGLR 66

Query: 64  PVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGG 123
           P++VHGGGPEIN+WL ++GIE QF NGLRVTDA TM+VVEMVLVGRVNK+IVS IN  GG
Sbjct: 67  PILVHGGGPEINSWLDKLGIEAQFKNGLRVTDAPTMDVVEMVLVGRVNKEIVSLINQAGG 126

Query: 124 RAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQS 183
            AVG CG DG L+ ARP  QEGIGFVGEV++VN +++E L   GYIPV+SSVAAD++GQ+
Sbjct: 127 LAVGLCGKDGNLITARPQGQEGIGFVGEVSNVNIKILETLASNGYIPVVSSVAADDSGQA 186

Query: 184 FNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGG 243
           +NINADTVAGEIAAAL AEKLILLTDTRGIL+D K P +LIP+++I ++RELI  G+V G
Sbjct: 187 YNINADTVAGEIAAALGAEKLILLTDTRGILKDYKDPGTLIPKVDIREARELINGGVVSG 246

Query: 244 GMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGY 293
           GMIPKV CC+RSLAQGVRAAHIIDGRIPHALLLEIFTD GIGTMI+GS Y
Sbjct: 247 GMIPKVTCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILGSQY 296


Lambda     K      H
   0.320    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 391
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 297
Length adjustment: 27
Effective length of query: 274
Effective length of database: 270
Effective search space:    73980
Effective search space used:    73980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_011317428.1 AVA_RS02805 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.4795.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4795.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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