Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate WP_011317857.1 AVA_RS05095 imidazole glycerol phosphate synthase subunit HisF
Query= SwissProt::Q7SIB9 (252 letters) >NCBI__GCF_000204075.1:WP_011317857.1 Length = 257 Score = 299 bits (765), Expect = 4e-86 Identities = 157/254 (61%), Positives = 197/254 (77%), Gaps = 5/254 (1%) Query: 3 LAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAI 62 L+KRI+PCLDV AGRVVKGVNFV+L+DAGDPVE A+ Y++AGADELVFLDI+ATHE+R Sbjct: 2 LSKRILPCLDVKAGRVVKGVNFVDLKDAGDPVELAKVYNDAGADELVFLDITATHEDRDT 61 Query: 63 LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFG 122 ++DVV R AE+VFIPLTVGGG++SLE+ + LL +GADKVS+NSAAVR PELI +D FG Sbjct: 62 IIDVVYRTAEQVFIPLTVGGGIQSLENVKALLRAGADKVSINSAAVRDPELIDRASDRFG 121 Query: 123 AQAVVLAIDARWRGDFP----EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDG 178 Q +V+AIDAR R D +V+V GGR TGL A+ WA + + GAGE+L+TSMD DG Sbjct: 122 NQCIVVAIDARRRVDPSNPGWDVYVRGGRENTGLDALSWAKEVEKRGAGELLVTSMDADG 181 Query: 179 TKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFHFGEIPIPK 237 T+ GYDL LTR +AE+V +PVIASGGAG EH A G AEAAL AS+ H+G++ + + Sbjct: 182 TQAGYDLELTRAIAESVEIPVIASGGAGNCEHIYTALTEGKAEAALLASLLHYGQLSVAE 241 Query: 238 LKRYLAEKGVHVRL 251 +K YL + V VRL Sbjct: 242 IKNYLRDCQVPVRL 255 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 233 Number of extensions: 14 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 252 Length of database: 257 Length adjustment: 24 Effective length of query: 228 Effective length of database: 233 Effective search space: 53124 Effective search space used: 53124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate WP_011317857.1 AVA_RS05095 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.6168.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6168.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.