Alignments for a candidate for proC in Trichormus variabilis ATCC 29413

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; EC 1.5.1.2; PCA reductase (uncharacterized)
to candidate WP_011318429.1 AVA_RS08190 pyrroline-5-carboxylate reductase

Query= curated2:P74572
         (267 letters)



>NCBI__GCF_000204075.1:WP_011318429.1
          Length = 314

 Score =  187 bits (476), Expect = 2e-52
 Identities = 112/266 (42%), Positives = 157/266 (59%), Gaps = 3/266 (1%)

Query: 3   IQLGIIGGGVMAEAILARLIAEKTYAPEE-IIVGEPHGARRDYLQKTYQVRVSPDNQEAA 61
           +++  IGGG M E I++RL++ KT    E IIV EP+  R  YL+K Y V  +  N EA 
Sbjct: 41  LKIAFIGGGTMGEMIISRLLSTKTVEKSELIIVSEPYSTRCLYLEKEYGVHTTNCNIEAV 100

Query: 62  NVSEVLLLAVKPQVLDRVLASLAGGANRP-LVISILAGVSLQRIQKGFPDHAIIRAMPNT 120
             + +++LAVKPQVL  V+A L        LVISI+ G S+  + +G    A++R MPN 
Sbjct: 101 QGASIVILAVKPQVLPEVMAVLKDQIPPDALVISIVGGASVSSLCQGLNHGAVVRTMPNI 160

Query: 121 PATVGAGMTAIAANKMVEPDQLAKAKAIFSAVGN-VVEVPENLMDAVTGVSGSGPAYVAL 179
              VG G T  +A+  V   Q +  + I  A+G   V   E+ +D  T +S +G  +V L
Sbjct: 161 AVQVGHGTTVWSASSNVTEIQRSHTQIILQALGKEFVTQNEHYLDMATALSSAGTGFVFL 220

Query: 180 MIEALADGGVLAGLPRAIAQKLALQTVLGTAELIKETEEHPAQIKDKVTSPGGTTIAGVA 239
            IEA+ D GV  GL R  AQ+L L T+ G+ EL+ +T EHPA +++KVTSPGG T AG+ 
Sbjct: 221 YIEAMIDAGVQMGLTRIQAQELTLHTIAGSVELMLQTNEHPAVLRNKVTSPGGVTAAGIY 280

Query: 240 VLEKMGFRSAIIEAVRAAYRRSQELG 265
            LEK G R++I  A   A  R+Q+LG
Sbjct: 281 ELEKGGMRTSISNAFSTALSRTQQLG 306


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 206
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 314
Length adjustment: 26
Effective length of query: 241
Effective length of database: 288
Effective search space:    69408
Effective search space used:    69408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_011318429.1 AVA_RS08190 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.14213.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14213.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.