Alignments for a candidate for prs in Trichormus variabilis ATCC 29413

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_011318787.1 AVA_RS10070 ribose-phosphate pyrophosphokinase

Query= SwissProt::P14193
         (317 letters)



>NCBI__GCF_000204075.1:WP_011318787.1
          Length = 338

 Score =  350 bits (899), Expect = e-101
 Identities = 173/308 (56%), Positives = 227/308 (73%), Gaps = 1/308 (0%)

Query: 10  LKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPV 69
           L++FS +SN +L++E+A  +G+ LG     RF+DGE+ + I+ESIRGCD Y+IQ    PV
Sbjct: 30  LRLFSGSSNVQLSQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPCCQPV 89

Query: 70  NEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATR 129
           N+H+MELLIMVDA +RASA+ +  VIPYYGYAR DRK   RE ITAKL ANL+  AGA R
Sbjct: 90  NDHLMELLIMVDACRRASARQVTAVIPYYGYARADRKTAGRESITAKLVANLITQAGANR 149

Query: 130 VIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRL 189
           V+A+DLHA QIQG+FDIP DH+ G P+L +Y   K L D+V+VSPD GGV RAR  A +L
Sbjct: 150 VLAMDLHAAQIQGYFDIPFDHVYGSPVLLDYLTSKQLHDLVVVSPDVGGVARARAFAKKL 209

Query: 190 K-APIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEV 248
             AP+AIIDKRR   NVAEV+N++G+++GKTA+L+DD+IDT GTI   A  L E GA++V
Sbjct: 210 NDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAVLVDDMIDTGGTIAAGAKLLREEGARQV 269

Query: 249 YACCTHPVLSGPAVERINNSTIKELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVHE 308
           YAC TH V S PAVER+++   +E++VTN+I +PE  +  +   LSV  LL E I R+HE
Sbjct: 270 YACATHAVFSPPAVERLSSGLFEEVIVTNTIPIPESDRFPQLVVLSVANLLGETIWRIHE 329

Query: 309 QQSVSYLF 316
             S+S +F
Sbjct: 330 DTSISSMF 337


Lambda     K      H
   0.319    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 264
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 338
Length adjustment: 28
Effective length of query: 289
Effective length of database: 310
Effective search space:    89590
Effective search space used:    89590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_011318787.1 AVA_RS10070 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.28623.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28623.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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