Alignments for a candidate for asd in Trichormus variabilis ATCC 29413

Align aspartate semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_011320317.1 AVA_RS18285 aspartate-semialdehyde dehydrogenase

Query= metacyc::AT1G14810-MONOMER
         (375 letters)



>NCBI__GCF_000204075.1:WP_011320317.1
          Length = 347

 Score =  350 bits (897), Expect = e-101
 Identities = 173/335 (51%), Positives = 239/335 (71%), Gaps = 8/335 (2%)

Query: 41  LAVVGVTGAVGQEFLSVLSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNG 100
           +A++G TGAVG E L +L  R+FP + +K+LAS+RS G+ + F G    VE ++  +   
Sbjct: 7   VAILGATGAVGTELLELLESRNFPVAELKLLASERSVGRSLPFKGENIIVEAVSDRALEN 66

Query: 101 VDIALFSAGGSISKEFGPLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMG 160
           VDI L SAGGS SK +  +A EKG +V+DNSSAFRM   VPL++PEVNP+A    K    
Sbjct: 67  VDIVLASAGGSTSKAWASVAVEKGAVVIDNSSAFRMNPDVPLIVPEVNPQAAADHK---- 122

Query: 161 KGALIANPNCSTIICLMAVTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEG 220
              +IANPNC+TI+  +AV PLH    V+R+V +TYQ+ASGAGA AM E+  Q+  +L+G
Sbjct: 123 --GIIANPNCTTILMTLAVWPLHQVRPVQRIVAATYQSASGAGAKAMAEVKTQSSAILKG 180

Query: 221 KPPTCNIFGQQYAFNLFSHNAPILDNGYNEEEMKLVKETRKIWNDTEVKVTATCIRVPVM 280
           + P   +     AFNLF HN+P+ D+GY EEE+K+V ETRKI+   E+++TATC+RVPV+
Sbjct: 181 EEPVAEVLPYPLAFNLFPHNSPLTDSGYCEEELKMVNETRKIFGTQEIRITATCVRVPVL 240

Query: 281 RAHAESVNLQFENPLDENTAREILKKAPGVYIIDDRASNTFPTPLDVSNKDDVAVGRIRR 340
           RAH+E++NL+F  P   + AREIL  APGV +++D   N FP P++ S +D+V VGRIR+
Sbjct: 241 RAHSEAINLEFAEPFSPDEAREILSHAPGVKLLEDWGKNYFPMPIEASGRDEVLVGRIRQ 300

Query: 341 DVSQDGNFGLDIFVCGDQIRKGAALNAVQIAEMLL 375
           D+S     GL++++CGDQIRKGAALNAVQIAE+L+
Sbjct: 301 DISHP--CGLELWLCGDQIRKGAALNAVQIAELLV 333


Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 321
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 347
Length adjustment: 29
Effective length of query: 346
Effective length of database: 318
Effective search space:   110028
Effective search space used:   110028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011320317.1 AVA_RS18285 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.29986.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29986.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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