Alignments for a candidate for trpD_1 in Trichormus variabilis ATCC 29413

Align Anthranilate synthase component 2; AS; ASII; EC 4.1.3.27; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component (uncharacterized)
to candidate WP_011321547.1 AVA_RS24820 anthranilate synthase

Query= curated2:Q57690
         (197 letters)



>NCBI__GCF_000204075.1:WP_011321547.1
          Length = 728

 Score =  131 bits (329), Expect = 3e-35
 Identities = 80/198 (40%), Positives = 112/198 (56%), Gaps = 12/198 (6%)

Query: 4   KKVLVIDNIDSFVWNLVQYVGTLGYKVKLVDNKITLDEIKKINPDRIIISPGPKTPKE-- 61
           K++L+ID  DSFV  L  Y+ T G  V  + +           PD +++SPGP  P +  
Sbjct: 526 KRILLIDYEDSFVHTLANYIRTTGATVTTLRHGFAESYFDTERPDLVVLSPGPGRPSDFR 585

Query: 62  AGNCIKIIQEVDIPILGVCLGHQCIVEAFGGEVGRAKRVMHGKASLINHDGEG--IFKDI 119
               +  +   +IPI GVCLG Q IVEAFGGE+G      HGK + I+       +F+ +
Sbjct: 586 VPQTVAALVGREIPIFGVCLGLQGIVEAFGGELGVLDYPQHGKPARISVTAPDSVLFQHL 645

Query: 120 PNPFYGGRYHSLIA--KEVPKELKITAKSLDDNYIMGVRHKKLPIEGVQFHPESILTESD 177
           P  F  GRYHSL A  + +P ELK+ A S +DN IM + H+ LPI  VQFHPESI+T + 
Sbjct: 646 PASFIVGRYHSLFAQPQTIPSELKVIAIS-EDNVIMAIEHQTLPIAAVQFHPESIMTLAG 704

Query: 178 NLKFPDLGLKLIKNFVES 195
                ++G  +IKN V++
Sbjct: 705 -----EVGQTIIKNVVQT 717


Lambda     K      H
   0.319    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 318
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 728
Length adjustment: 30
Effective length of query: 167
Effective length of database: 698
Effective search space:   116566
Effective search space used:   116566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011321547.1 AVA_RS24820 (anthranilate synthase)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.2795.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2795.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.