Alignments for a candidate for cysE in Trichormus variabilis ATCC 29413

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate WP_011321667.1 AVA_RS25465 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>NCBI__GCF_000204075.1:WP_011321667.1
          Length = 239

 Score =  210 bits (534), Expect = 2e-59
 Identities = 103/204 (50%), Positives = 144/204 (70%), Gaps = 3/204 (1%)

Query: 5   MLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSRFF 64
           ML  D+ T++++DPAAR++ E++  Y GL A+  HR+ H LYK       RLIS +SRF 
Sbjct: 1   MLLTDLRTIYERDPAARNWLEILFCYPGLQALMFHRLTHWLYKIGIPLFPRLISSISRFL 60

Query: 65  TGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDD 124
           TGIEIHPGA IG+  FIDHGMGVVIGET  +G+   ++QGVTLGGTGKE GKRHPT+ ++
Sbjct: 61  TGIEIHPGAKIGKGVFIDHGMGVVIGETAIVGDYALIYQGVTLGGTGKESGKRHPTLGEN 120

Query: 125 ALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRRDLNHQD 184
            ++  GAKVLG+I +G   +IGAGSVVL DVP  +TVVG+PGR++  +   V   L H  
Sbjct: 121 VVVGAGAKVLGNIHIGNNVRIGAGSVVLRDVPSNTTVVGVPGRLIRVDQAHV---LAHGK 177

Query: 185 LPDPVADRFKSLEQQILELKAELE 208
           + D  A+  ++L +++ +L+ ++E
Sbjct: 178 VRDMEAEAIRALFERVKDLEQQVE 201


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 239
Length adjustment: 23
Effective length of query: 194
Effective length of database: 216
Effective search space:    41904
Effective search space used:    41904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate WP_011321667.1 AVA_RS25465 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.18433.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18433.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.