Alignments for a candidate for cysK in Trichormus variabilis ATCC 29413

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_011321669.1 AVA_RS25475 cysteine synthase A

Query= BRENDA::A8YBP8
         (315 letters)



>NCBI__GCF_000204075.1:WP_011321669.1
          Length = 320

 Score =  493 bits (1268), Expect = e-144
 Identities = 249/315 (79%), Positives = 278/315 (88%)

Query: 1   MLIARDITQLVGRTPLVQLNRIPVAEGVKARIVVKLESMNPAASVKDRIGVSMVEDAEAA 60
           M IAR+IT+LVGRTPLV+LN IP AEG  A IVVKLESMNP+ASVKDRIGVSMVE AE A
Sbjct: 1   MKIARNITELVGRTPLVRLNNIPQAEGSVADIVVKLESMNPSASVKDRIGVSMVESAEEA 60

Query: 61  GLIHPDKTILVEPTSGNTGIALAMVAAAKGYRLVLTMPETMSLERRAMLKAYGAQLELTP 120
           GLIHP KTILVEPTSGNTGIALAMVAAAKGY L+LTMPETMS ERR+ML+AYGAQLELTP
Sbjct: 61  GLIHPGKTILVEPTSGNTGIALAMVAAAKGYHLILTMPETMSTERRSMLRAYGAQLELTP 120

Query: 121 GSQGMEGAITRAEEIVENTPNAYSLQQFRNPANPKIHRETTAEEIWADTDGLVDIVIGGV 180
           G +GM GAI RAE+IV   PNAY LQQFRNPANPK+HR+TTAEEIW+DTDG VDIV+GGV
Sbjct: 121 GLEGMRGAIARAEQIVTELPNAYMLQQFRNPANPKVHRQTTAEEIWSDTDGQVDIVVGGV 180

Query: 181 GTGGTITGIAETIKPRRPQFQAIAVEPSNSPVLSGGQPGPHKIQGIGAGFIPAIFRPELI 240
           GTGGT+TG+A+ +K R+P FQAIAVEPSNS VLSGG+ G HKIQGIGAGFIPAI R ELI
Sbjct: 181 GTGGTLTGVAQVLKERKPSFQAIAVEPSNSQVLSGGKSGAHKIQGIGAGFIPAICRLELI 240

Query: 241 DEVIIVDDTEAFAYARRLARQEGLLSGISAGAALWAAIQVGKRPENEDKLIVMIQPSFGE 300
           D++I V D +A AY+RRLAR+EGLLSGIS GAAL+AAIQV KRPEN  KLIVM+QPSFGE
Sbjct: 241 DQIIAVSDEDAIAYSRRLAREEGLLSGISTGAALYAAIQVAKRPENSGKLIVMVQPSFGE 300

Query: 301 RYLSTALFKDLEDID 315
           RYLST LFKDL +++
Sbjct: 301 RYLSTTLFKDLSELE 315


Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 320
Length adjustment: 27
Effective length of query: 288
Effective length of database: 293
Effective search space:    84384
Effective search space used:    84384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_011321669.1 AVA_RS25475 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.6637.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6637.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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