Alignments for a candidate for asp-kinase in Cereibacter sphaeroides ATCC 17029

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_011337028.1 RSPH17029_RS02525 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000015985.1:WP_011337028.1
          Length = 419

 Score =  406 bits (1043), Expect = e-118
 Identities = 221/417 (52%), Positives = 296/417 (70%), Gaps = 14/417 (3%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           M L+V KFGGTSV  + RI+  A+KVK+  E G D++V++SAMSG+TN L+   +Q +  
Sbjct: 1   MPLLVMKFGGTSVADLARIKNAAQKVKREVERGYDVIVIVSAMSGKTNELVGWVEQTSPL 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
              RE D +VS+GE VT  L+ + L +  VPA S+ G QV I T S H+ AR L+I  + 
Sbjct: 61  FDAREYDAVVSSGENVTAGLMALTLQEMEVPARSWQGWQVPIRTTSQHSAARFLEIPREN 120

Query: 121 IRADLKEG-RVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVY 179
           + A   EG +V VVAGFQGV   G ITTLGRGGSDTT VA AAA  A+ C IYTDVDGVY
Sbjct: 121 LDAKFAEGFKVAVVAGFQGVSPEGRITTLGRGGSDTTAVAFAAAFAAERCDIYTDVDGVY 180

Query: 180 TTDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFK---EGP 236
           TTDPR+  +AR+LEKI +EEMLE+ASLG+KVLQ RSVE A +Y V LRVL SF+   E  
Sbjct: 181 TTDPRIASKARKLEKIAYEEMLELASLGAKVLQTRSVELAMRYKVKLRVLSSFEDTDETS 240

Query: 237 GTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQ 296
           GTL+  DEE+ ME  ++SG+A++RDEAK+T+  V D PGVA  I GP++ + + VDMIVQ
Sbjct: 241 GTLV-CDEEDIMESKVVSGVAYSRDEAKMTLVTVEDRPGVAAAIFGPLAEAGVNVDMIVQ 299

Query: 297 NVAH-------DNTTDFTFTVHRNEYEKAQSVLENTARE--IGAREVIGDTKIAKVSIVG 347
           N++         + TD TF+   N+  +A+  LE+   E  I   +++ DT++AKVS+VG
Sbjct: 300 NISEKDYGSHPGSVTDMTFSCPINQVARARKALEDAKAEGTIVYDDLVVDTEVAKVSVVG 359

Query: 348 VGMRSHAGVASCMFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404
           +GMRSHAGVA+ MF+ALA + +NI++I+TSEIK+SV+++ KY+ELAV+ALH AF L+
Sbjct: 360 IGMRSHAGVAATMFKALAADGVNIKVIATSEIKISVLIDRKYMELAVQALHDAFALE 416


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 422
Number of extensions: 21
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 419
Length adjustment: 31
Effective length of query: 380
Effective length of database: 388
Effective search space:   147440
Effective search space used:   147440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_011337028.1 RSPH17029_RS02525 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.4836.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.4836.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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