Alignments for a candidate for proB in Cereibacter sphaeroides ATCC 17029

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_011338952.1 RSPH17029_RS17755 glutamate 5-kinase

Query= reanno::Korea:Ga0059261_3512
         (367 letters)



>NCBI__GCF_000015985.1:WP_011338952.1
          Length = 370

 Score =  308 bits (788), Expect = 2e-88
 Identities = 187/365 (51%), Positives = 236/365 (64%), Gaps = 10/365 (2%)

Query: 8   SCPRLVVKIGSALLVDPEGAIRRDWLEGIAADIAARVRAGQQIAVVSSGAIALGARRLKL 67
           S  RLVVKIGSALLVD EG +RR WL  +A D+A     G Q+ +VSSG+IALG R L L
Sbjct: 10  SAKRLVVKIGSALLVDGEG-LRRQWLSALALDVAEARTRGTQVILVSSGSIALGRRVLHL 68

Query: 68  AKGGRASLEDAQAAAATGQIALSQVWAEVLAANGLTAAQMLVTLDDLEDRRRYLNAAATL 127
             G  A LE +QAAAA GQI L++ + EVLA +G+T AQ+LVTL+D EDRRRYLN+ AT+
Sbjct: 69  PPGPLA-LEQSQAAAAVGQIRLARAYEEVLAPHGITTAQVLVTLEDTEDRRRYLNSRATM 127

Query: 128 GRLLSLGVVPVINENDSVATAEIRFGDNDRLAARVAQAADASGVVLLSDIDGLYDRNPAL 187
             LL LG VP++NEND+VAT EIRFGDNDRLAA++A    A  +VLLSD+DG Y  NP  
Sbjct: 128 ETLLGLGTVPIVNENDTVATDEIRFGDNDRLAAQIAVTVGADQLVLLSDVDGFYSANPKE 187

Query: 188 -PGAVHIPVVERIDGRVEGMADRGSASGMGSGGMVSKIEAARIAASAGVSLAIANGRVDR 246
            P A    +VE I   +E MA     SG+  GGM +KI AA+ A + G ++AI  G   R
Sbjct: 188 DPTAERFDLVETITPALEAMAG-DPVSGLSKGGMKTKIMAAKTAVAGGCAMAITEGSAMR 246

Query: 247 PLSA---DARHTVFLPEKRTR-ARKAWLAGRLTAKGSIIVDAGAAQALTEGRSLLAIGAT 302
           PL A    A  T F+ +   + ARK W+   +  +G+I VDAGA QAL  G+SLL  G  
Sbjct: 247 PLKALEQGAARTWFVAQGDPQAARKRWI-NAMKPRGTIRVDAGAVQALQAGKSLLPAGVV 305

Query: 303 AIRGMFFRGDLVTIEGPNGPI-ARGLSEYDAPDAQAILGTRSDDQGEILGYAPRSTLVHR 361
           A+ G F RGD V I GP G +  RGL+ Y A +A  I G RS +   ILGY+ R+ L+HR
Sbjct: 306 AVEGNFGRGDPVEIAGPMGEVLGRGLTRYTAVEAVQIAGHRSAEIVAILGYSGRAALIHR 365

Query: 362 NHMAL 366
           + M +
Sbjct: 366 DDMVI 370


Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 349
Number of extensions: 25
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 370
Length adjustment: 30
Effective length of query: 337
Effective length of database: 340
Effective search space:   114580
Effective search space used:   114580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011338952.1 RSPH17029_RS17755 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.9138.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.9138.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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