Alignments for a candidate for serC in Cereibacter sphaeroides ATCC 17029

Align Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 (characterized)
to candidate WP_011840115.1 RSPH17029_RS00100 phosphoserine transaminase

Query= SwissProt::P52878
         (370 letters)



>NCBI__GCF_000015985.1:WP_011840115.1
          Length = 385

 Score =  470 bits (1210), Expect = e-137
 Identities = 231/371 (62%), Positives = 280/371 (75%), Gaps = 10/371 (2%)

Query: 3   PTRVPNNPCFSSGPCAKHPGYSIEELKDTPFGRSHRSNLGKEKLAEAIKKTRDMLGLPDD 62
           P   P NP FSSGPCAK P YS++ L D P GRSHR+ +GK KL EAI  TR++LG+P+ 
Sbjct: 7   PAARPANPRFSSGPCAKIPAYSLDLLSDAPLGRSHRAAVGKAKLKEAIDLTREILGVPEG 66

Query: 63  YLVGIVPASDTGAFEMCLWSMLGCRGVDVLVWESFSKGWATDITKQLKLKDVRVFEAEYG 122
           Y +GIVP SDTGA EM +WS+LG R V++L WESF +GW TD  KQLKL D  V +A YG
Sbjct: 67  YRIGIVPGSDTGAVEMAMWSLLGARPVEMLAWESFGEGWVTDAVKQLKL-DATVRKAAYG 125

Query: 123 KLPDLKKVDFKNDVVFVWNGTTSGVKVPNGDWIPENREGLTLCDATSAIFAMDIPYHKLD 182
           ++ DL +VDF  DVVF WNGTTSGV++P+GD IP +REGLT+CDATSA FAMD+P+ KLD
Sbjct: 126 EIVDLAQVDFTRDVVFTWNGTTSGVRLPDGDAIPADREGLTICDATSAAFAMDLPWDKLD 185

Query: 183 VITFSWQKVLGGEGAHGMLILSPRAVQRLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTI 242
           V+TFSWQKVLGGEG HGMLILSPRAV+RLESYTPAWP+PKIFR+TKGGKL + IF+G TI
Sbjct: 186 VVTFSWQKVLGGEGGHGMLILSPRAVERLESYTPAWPMPKIFRMTKGGKLIEGIFQGETI 245

Query: 243 NTPSMLANEDWLATLKWAESVGGLKPLIQRTNDNLAVFEAFVAKNNWIHFLAETKEIRSS 302
           NTPSMLA ED+L +LKWA+ +GGLK L+ R   N  V   FVA ++WI  LA      S+
Sbjct: 246 NTPSMLAVEDYLVSLKWAQRIGGLKALVARAEANSKVVADFVAAHDWIANLAVDPATAST 305

Query: 303 TSVCFKVDLSDEKL-------KELIKTLEKEKVAYDIGSYRDAPSGLRIWCGATVEKEDL 355
           TSVC K   +D ++       K + K LEKE VA D+G+YRDAP+GLRIWCG+TVE  D+
Sbjct: 306 TSVCLK--FTDPRIADGAAFAKAVAKRLEKEGVALDVGAYRDAPAGLRIWCGSTVETADV 363

Query: 356 QCLCEWIEWAY 366
             L  WIEWA+
Sbjct: 364 AALMPWIEWAF 374


Lambda     K      H
   0.318    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 489
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 385
Length adjustment: 30
Effective length of query: 340
Effective length of database: 355
Effective search space:   120700
Effective search space used:   120700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011840115.1 RSPH17029_RS00100 (phosphoserine transaminase)
to HMM TIGR01365 (phosphoserine aminotransferase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.17932.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.17932.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.