Alignments for a candidate for gatB in Cereibacter sphaeroides ATCC 17029

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate WP_011840545.1 RSPH17029_RS03555 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= metacyc::MONOMER-13956
         (476 letters)



>NCBI__GCF_000015985.1:WP_011840545.1
          Length = 503

 Score =  383 bits (983), Expect = e-111
 Identities = 203/484 (41%), Positives = 301/484 (62%), Gaps = 14/484 (2%)

Query: 2   NFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMK 61
           ++E VIG+E+H ++ + +K+FS + T FGAE N+  S +D   PG+LPV+N+  V  A++
Sbjct: 20  DWELVIGMEIHAQVSSNAKLFSGASTTFGAEPNSNVSFVDCAMPGMLPVINEFCVAQAVR 79

Query: 62  AAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVG-GKTKRIGITR 120
             + L  +I   + FDRKNYFYPD P+ YQISQ   PI   G + +E+  G  + + I R
Sbjct: 80  TGLGLKAQINLVSAFDRKNYFYPDLPQGYQISQLYHPIVGEGEVLVELAPGIARLVRIER 139

Query: 121 LHLEEDAGKLTHTGD-GYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYTG 179
           +HLE+DAGK  H  D   S VDFNR G  L+EIVS PDIR PEEA AY+ KL+ I++Y G
Sbjct: 140 IHLEQDAGKSIHDMDPNLSFVDFNRTGVALMEIVSRPDIRGPEEAAAYVAKLRQILRYLG 199

Query: 180 VSDCKMEEGSLRCDANISLRPIGQEE----------FGTKTELKNLNSFAFVQKGLEHEE 229
             D  M+ G+LR D N+S+   GQ E           GT+ E+KN+NS  F+Q+ +++E 
Sbjct: 200 TCDGNMQNGNLRADVNVSVCRPGQYEKYQETQDFSHLGTRCEIKNMNSMRFIQQAIDYEA 259

Query: 230 KRQEQVLLSGFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERV 289
           +RQ  +L  G  + QETR YD    +T  MR KE + DYRYFP+PDL+ L I+  W + +
Sbjct: 260 RRQIAILEDGGKVVQETRLYDPDKGETRSMRSKEEAHDYRYFPDPDLLPLEIEQGWVDEI 319

Query: 290 KASIPELPDERRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEV 349
            AS+PELPD ++ R++ + G   YDA VLT   + A +FEE V +G + KQA+NW++ E+
Sbjct: 320 AASMPELPDAKKARFMADYGVTDYDANVLTAELDAAAYFEE-VARGRDGKQAANWVINEL 378

Query: 350 SAYLNAEQKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKG 409
              LN +   +AD  +    L G++ LI  G IS K+AK +F+ L  +GGD  ++   +G
Sbjct: 379 FGRLNKQGLTIADPPVKAGQLGGVLDLIASGEISGKMAKDLFEILWTEGGDPAEVAAARG 438

Query: 410 LVQISDEGVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKIL 469
           + Q++D G +   V E +  NP  +E  K    +  G+ VGQ++KA+ G+ANP  VN+I+
Sbjct: 439 MKQVTDTGAIETAVDEIIAANPAQVEKAK-ANPKLAGWFVGQVIKATGGKANPAAVNQIV 497

Query: 470 LEEI 473
            +++
Sbjct: 498 AQKL 501


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 622
Number of extensions: 32
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 503
Length adjustment: 34
Effective length of query: 442
Effective length of database: 469
Effective search space:   207298
Effective search space used:   207298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_011840545.1 RSPH17029_RS03555 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.27061.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.27061.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.