Alignments for a candidate for aroG in Cereibacter sphaeroides ATCC 17029

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_011841103.1 RSPH17029_RS07920 3-deoxy-7-phosphoheptulonate synthase class II

Query= BRENDA::P29976
         (525 letters)



>NCBI__GCF_000015985.1:WP_011841103.1
          Length = 456

 Score =  542 bits (1397), Expect = e-159
 Identities = 272/453 (60%), Positives = 340/453 (75%), Gaps = 4/453 (0%)

Query: 75  WTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLL 134
           WT   W+ K  +Q+PDYP+A  +++V   +  +PP+VFAGEAR L+  LA+AA G+AFLL
Sbjct: 5   WTKTDWRAKPRIQMPDYPDAAAVKAVEGQLAKYPPLVFAGEARKLKAALAEAAEGRAFLL 64

Query: 135 QGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEK 194
           QGGDCAESF EF+A NIRDTFRVLLQM+IVLT+G +VPV+KVGRMAGQFAKPRS   E  
Sbjct: 65  QGGDCAESFSEFSADNIRDTFRVLLQMAIVLTYGAKVPVVKVGRMAGQFAKPRSAPTEVI 124

Query: 195 DGVKLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVTQ 254
           +G++LPSY+GD ING     ++RIPDP RM++AYTQ+AA+LNLLRAF+TGG+A I RV  
Sbjct: 125 NGMELPSYRGDIINGFDPSPEARIPDPQRMLQAYTQAAASLNLLRAFSTGGFADIHRVHS 184

Query: 255 WNLDFVEQSEQADRYQELANRVDEALGFMSACGLG--TDHPLMTTTDFYTSHECLLLPYE 312
           W L F EQ ++A+RY++++NR+ +AL FMSA G+   T H L +T DFYTSHE LLL YE
Sbjct: 185 WTLGFCEQ-DKAERYRDISNRISDALDFMSAAGVNGSTSHNL-STVDFYTSHEALLLEYE 242

Query: 313 QSLTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVK 372
           ++L R+DS +G     S HM+W G+RTRQ+DGAHVEF RG+ NP+G+K        +L  
Sbjct: 243 EALCRIDSITGQPVAGSGHMIWIGDRTRQIDGAHVEFCRGVLNPIGLKCGPSTTVEDLKV 302

Query: 373 LVEILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCG 432
           L+  LNP N+ GR+T+I R GA  +   LP LIRAVR  G  VTW CDPMHGNTIKA  G
Sbjct: 303 LMARLNPQNEAGRLTLIARFGAGKVGEHLPRLIRAVREEGAKVTWCCDPMHGNTIKAASG 362

Query: 433 LKTRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHT 492
            KTR FDS+L EVR F  +H+ EGS  GG+H EMTGQ+VTEC GG R VT +DLS+RYHT
Sbjct: 363 YKTRPFDSVLREVREFFSIHKAEGSIPGGVHFEMTGQDVTECTGGLRAVTDEDLSNRYHT 422

Query: 493 HCDPRLNASQSLELAFIVAERLRKRRTGSQRVS 525
            CDPRLNASQSLELAF+VAE L   R  ++RV+
Sbjct: 423 ACDPRLNASQSLELAFLVAEELTTMREAARRVA 455


Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 665
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 456
Length adjustment: 34
Effective length of query: 491
Effective length of database: 422
Effective search space:   207202
Effective search space used:   207202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_011841103.1 RSPH17029_RS07920 (3-deoxy-7-phosphoheptulonate synthase class II)
to HMM TIGR01358 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.19540.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.19540.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.