Alignments for a candidate for argH in Cereibacter sphaeroides ATCC 17029

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_011841626.1 RSPH17029_RS12015 argininosuccinate lyase

Query= BRENDA::Q8DVX5
         (460 letters)



>NCBI__GCF_000015985.1:WP_011841626.1
          Length = 471

 Score =  404 bits (1039), Expect = e-117
 Identities = 215/454 (47%), Positives = 284/454 (62%), Gaps = 1/454 (0%)

Query: 8   LWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAATIKAGL 67
           +WGGRF AG    ++   ASI FD++L   D++GS AH  ML  +GI++  DA  I  GL
Sbjct: 14  MWGGRFAAGPDAIMQAINASIGFDKRLYAQDIRGSRAHAAMLAAQGILTSRDAEAIGEGL 73

Query: 68  EDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDMHLYLKA 127
             +L E +AG   F V  EDIHMN+E+ L   IG  AG+LHTARSRNDQVA D  L+++ 
Sbjct: 74  LTVLSEIEAGGFPFRVELEDIHMNVEARLKELIGEPAGRLHTARSRNDQVAVDFRLWVRD 133

Query: 128 KLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFTRDSERF 187
           + D  I  +  L    +  A+     +MPG+THLQ AQP+++GHH++AY  M  RD  RF
Sbjct: 134 QCDAAISGIEALMRAFLAQAEAGADWVMPGFTHLQTAQPVTWGHHMLAYVEMLARDRSRF 193

Query: 188 IFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILEFLSNAS 247
                  +  PLGAAALAGT FPIDR MTA  +GF  P +NSLD+VSDRDF LEFLS ++
Sbjct: 194 KDARARMNECPLGAAALAGTGFPIDRHMTAAALGFDRPTANSLDSVSDRDFALEFLSASA 253

Query: 248 ILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSGRVYANL 307
           I  +H+SR  EE++ W S +++FV LSD ++TGSSIMPQKKNPD AEL+R K GRV    
Sbjct: 254 ICALHLSRFAEELVIWSSAQFRFVRLSDRWTTGSSIMPQKKNPDAAELLRAKMGRVLGAA 313

Query: 308 FGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMAESTQKD 367
             L TVMK LPL Y+KD+QEDKE +FD A+T+ + L  + GM+  M  N + +A +    
Sbjct: 314 VALFTVMKGLPLTYSKDMQEDKEQVFDAADTLMLGLAAMTGMVGDMQANRESLAAAAASG 373

Query: 368 FSNATELADYLASK-GMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLIEEDVY 426
           FS AT+LAD+L  +  +PFR AH + G L+      G  L D+ L   Q +   I EDV+
Sbjct: 374 FSTATDLADWLVRELNLPFRDAHHVTGTLVARAEARGCDLPDLSLAEMQEVHPGIREDVF 433

Query: 427 ETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460
             L    +V  R S GGT  + V+ Q A  K+ L
Sbjct: 434 AVLGVENSVRSRTSYGGTAPDNVRAQAARWKELL 467


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 561
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 471
Length adjustment: 33
Effective length of query: 427
Effective length of database: 438
Effective search space:   187026
Effective search space used:   187026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011841626.1 RSPH17029_RS12015 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.13224.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.13224.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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