Alignments for a candidate for dapA in Cereibacter sphaeroides ATCC 17029

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_011841738.1 RSPH17029_RS12825 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q8UGL3
         (294 letters)



>NCBI__GCF_000015985.1:WP_011841738.1
          Length = 290

 Score =  394 bits (1012), Expect = e-114
 Identities = 202/293 (68%), Positives = 235/293 (80%), Gaps = 3/293 (1%)

Query: 1   MFKGSIPALITPFTDNGSVDEKAFAAHVEWQIAEGSNGLVPVGTTGESPTLSHDEHKRVV 60
           M +GSIPAL+TPF  NG +D       V+WQIAEGS GLVPVGTTGESPTLSH+EH+ V+
Sbjct: 1   MIRGSIPALVTPFK-NGELDLDTLKKLVDWQIAEGSTGLVPVGTTGESPTLSHEEHETVI 59

Query: 61  ELCIEVAAKRVPVIAGAGSNNTDEAIELALHAQEAGADALLVVTPYYNKPTQKGLFAHFS 120
           E  ++ AA RVPVIAGAGSN+T E I L   A+  GADA LVVTPYYNKPTQ G+ AHF+
Sbjct: 60  EAVVKAAAGRVPVIAGAGSNSTAEGIRLIRFAETVGADAALVVTPYYNKPTQAGMIAHFT 119

Query: 121 AVAEAVKLPIVIYNIPPRSVVDMSPETMGALVKAHKNIIGVKDATGKLDRVSEQRISCGK 180
           A+ +   LPIVIYNIP RSVVDMSPETMG L +  + I+GVKDATGK++RVS+QR SCG 
Sbjct: 120 ALHDCCSLPIVIYNIPGRSVVDMSPETMGTLARLPR-IVGVKDATGKIERVSQQRASCGP 178

Query: 181 DFVQLSGEDGTALGFNAHGGVGCISVTANVAPRLCSEFQAAMLAGDYAKALEYQDRLMPL 240
           DF+QLSGED TALGFNAHGGVGCISVTANVAPRLC+EFQ A LAGD+AKALEYQDRLMPL
Sbjct: 179 DFIQLSGEDATALGFNAHGGVGCISVTANVAPRLCAEFQQATLAGDFAKALEYQDRLMPL 238

Query: 241 HRAIFMEPGVCGTKYALSKTRGGNRRVRSPLMSTLEPATEAAIDAALKHAGLM 293
           H AIF+EPG+ G KYALSK    +  VR PL+  L  AT+A I+AA++HAGL+
Sbjct: 239 HEAIFLEPGLVGAKYALSKLGLCSDEVRLPLVG-LTDATKARIEAAMRHAGLI 290


Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 349
Number of extensions: 14
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 290
Length adjustment: 26
Effective length of query: 268
Effective length of database: 264
Effective search space:    70752
Effective search space used:    70752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_011841738.1 RSPH17029_RS12825 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.6750.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.6750.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.