Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate WP_011841893.1 RSPH17029_RS14085 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Query= SwissProt::P56220
(274 letters)
>NCBI__GCF_000015985.1:WP_011841893.1
Length = 274
Score = 343 bits (879), Expect = 3e-99
Identities = 177/270 (65%), Positives = 209/270 (77%), Gaps = 4/270 (1%)
Query: 4 LQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKKAV 63
L+ IE+A+E R ITPA TREA+ + LD G+LRVAEK W +QW KKAV
Sbjct: 6 LEAAIEAAWEARETITPATKGE-TREAIEATLEALDKGSLRVAEKRGADWHVNQWAKKAV 64
Query: 64 LLSFRINDNKVMDGAETR--YYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNT 121
LL FR+ D +V G ++DKV KFA + EA+++ GFR VP VR+ A+IAR
Sbjct: 65 LLGFRLKDMEVQTGGPQAGTWWDKVDSKFAQWGEAQWKAAGFRAVPNCIVRRSAYIARGV 124
Query: 122 VLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 181
VLMPS+VN+GAYVDE TMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP+QA PTIIEDN
Sbjct: 125 VLMPSFVNLGAYVDESTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDN 184
Query: 182 CFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSK 241
CFIGARSEVVEG IV EGSV+ MGV++G+ST+I DRETGE+ YG VPAGSVVV+G++PSK
Sbjct: 185 CFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRETGEVMYGEVPAGSVVVAGSMPSK 244
Query: 242 DGSYSLYCAVIVKKVDAKTRGKVGINELLR 271
G +LYCAVIVK+VDA+TR K INELLR
Sbjct: 245 -GGVNLYCAVIVKRVDAQTRSKTSINELLR 273
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 276
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 274
Length adjustment: 25
Effective length of query: 249
Effective length of database: 249
Effective search space: 62001
Effective search space used: 62001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)
Align candidate WP_011841893.1 RSPH17029_RS14085 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.32172.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.32172.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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