Alignments for a candidate for aroE in Cereibacter sphaeroides ATCC 17029

Align shikimate dehydrogenase (EC 1.1.1.25) (characterized)
to candidate WP_011841953.1 RSPH17029_RS14595 shikimate dehydrogenase

Query= reanno::Caulo:CCNA_00003
         (285 letters)



>NCBI__GCF_000015985.1:WP_011841953.1
          Length = 279

 Score =  200 bits (508), Expect = 3e-56
 Identities = 118/270 (43%), Positives = 147/270 (54%), Gaps = 2/270 (0%)

Query: 11  VGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPA-ADRFETFVDGLRGGAVRGLNVT 69
           + GV G PI HS SP +H  W+   GL   Y+P   A AD  +      R G V G NVT
Sbjct: 9   LAGVIGSPIAHSRSPALHGYWLKRYGLKGHYIPMDVAQADLRDVLAAMPRMGFV-GCNVT 67

Query: 70  IPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTA 129
           IP KE  + +AD  +D A + GAAN L+F +DG ++ADNTDG G    +   AP +   +
Sbjct: 68  IPHKESVIGLADIVTDRAALIGAANTLIFRKDGKIYADNTDGTGFTANLRQNAPAWQPQS 127

Query: 130 APVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALL 189
            P V+ GAGGAAR  +AAL+  G P I + NR+ ARA  L   FG KV          +L
Sbjct: 128 GPAVVWGAGGAARAVIAALIEVGVPEIRLANRSRARADALRSDFGAKVHVHDWVQAGNIL 187

Query: 190 PEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGL 249
            +A  ++N TSLG+ G       L      AVV D+VY PLRT  L  AEAAG RTVDGL
Sbjct: 188 EDAMTVVNTTSLGMVGKPEFRVPLDALNPKAVVTDLVYAPLRTRLLVEAEAAGCRTVDGL 247

Query: 250 EMLLRQAIPTFETIYGQAPSPKIDVRVLAL 279
            MLL QA P FE  +G  P    + R   L
Sbjct: 248 GMLLHQAAPGFERWFGVRPEVDEETRAAVL 277


Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 211
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 279
Length adjustment: 26
Effective length of query: 259
Effective length of database: 253
Effective search space:    65527
Effective search space used:    65527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_011841953.1 RSPH17029_RS14595 (shikimate dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.2325.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.2325.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.