Alignments for a candidate for proA in Cereibacter sphaeroides ATCC 17029

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_011842417.1 RSPH17029_RS17760 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P07004
         (417 letters)



>NCBI__GCF_000015985.1:WP_011842417.1
          Length = 420

 Score =  352 bits (904), Expect = e-102
 Identities = 180/417 (43%), Positives = 271/417 (64%), Gaps = 5/417 (1%)

Query: 1   MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSE 60
           ++ ++G+ A+ A+ +LA      K   L   A+ + A+S+ IL AN +D+A     GL+ 
Sbjct: 9   LMREIGVRARAAAAELAFAEPSRKEEALNAAAEAMLARSDEILEANGRDLAFGAEKGLTP 68

Query: 61  AMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYE 120
           AM+DRL L  AR+ GI + +R V    DPVGQVI      SGL + R R PLGV+GVIYE
Sbjct: 69  AMMDRLKLDAARIDGIVEGLRAVAGQPDPVGQVIAEWDRPSGLHIRRVRTPLGVVGVIYE 128

Query: 121 ARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPD 180
           +RPNVT D  +LCLK+GNAVILRGG E+  ++ A  A +QD L+  GLP  A+Q +   D
Sbjct: 129 SRPNVTADAGALCLKSGNAVILRGGSESFHSSGAIHAALQDGLRQAGLPVDAIQRVPTRD 188

Query: 181 RALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALK 240
           RA V+EMLRM ++ID+++PRGG GL  L + ++ +PV     G+CH+Y D   ++ +A +
Sbjct: 189 RAAVAEMLRMVEHIDVIVPRGGKGLVGLVQAEARVPVFAHLEGICHVYADGDADLEKARR 248

Query: 241 VIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAK 300
           V++NAKT+R   C + E LL+++       P L + + ++GV + A+   LAQ+      
Sbjct: 249 VVLNAKTRRTGICGSAECLLIDRAFLAKHGPVLIEDLLKAGVEVRAE-GELAQVPG---- 303

Query: 301 VVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVD 360
            V  + E++  EFL + +  K+V  +D+AIAHIR +G+ H+++ILT +   A+RF   +D
Sbjct: 304 TVPAQPEDFGREFLDMIIAAKVVDGVDEAIAHIRRYGSSHTESILTENDATAERFFRRLD 363

Query: 361 SSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA 417
           S+ +  NAST+F DGG+FG+GAE+ ++T K+HARGP+G E LT++K++  GD TIRA
Sbjct: 364 SAILMRNASTQFADGGEFGMGAEIGIATGKMHARGPVGAEQLTSFKYLVTGDGTIRA 420


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 445
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 420
Length adjustment: 32
Effective length of query: 385
Effective length of database: 388
Effective search space:   149380
Effective search space used:   149380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011842417.1 RSPH17029_RS17760 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.12501.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.12501.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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