Alignments for a candidate for proC in Agathobacter rectalis ATCC 33656

Align pyrroline-5-carboxylate reductase (EC 1.5.1.2) (characterized)
to candidate WP_012742041.1 EUBREC_RS05265 pyrroline-5-carboxylate reductase

Query= BRENDA::O87725
         (266 letters)



>NCBI__GCF_000020605.1:WP_012742041.1
          Length = 266

 Score =  310 bits (793), Expect = 3e-89
 Identities = 157/266 (59%), Positives = 198/266 (74%)

Query: 1   MDKKIGFIGCGNMAQAMISALVKSKLIESNQIIVSNRSKNILEKMNKEYGITIAANNIEV 60
           M KK+GFIGCGNM +AMI  ++ S   +++ I+ S ++++  EK   E GI + A+N  V
Sbjct: 1   MSKKLGFIGCGNMGKAMIHGVLASGKAQASDILASAKTESSREKNAAELGIRLTADNKSV 60

Query: 61  AEKCDIVFLAVKQNLYEMVMKEIKDSVTKDKIFVSIAPGKTMEFLEAHLGAYAKILRTMP 120
           AE  DI+FLAVK   YE V+ EIKD+V+ D+I VSIAPGK++ + +   G   K++RTMP
Sbjct: 61  AEFADILFLAVKPQYYEEVIAEIKDTVSDDEIIVSIAPGKSLSWFDEMFGRSLKVIRTMP 120

Query: 121 NTPSMVSEGMTAICPNSNIASEELELLVKLIESFGAVEIIEEKLFDAVVAVSGSSPAYVF 180
           NTP+MV EGM  +C N  ++ EEL+ ++ L   F   E+I+EKL D V AVSGSSPAYVF
Sbjct: 121 NTPAMVGEGMMGVCANERVSQEELDTVLDLCSGFSKAEMIDEKLMDVVTAVSGSSPAYVF 180

Query: 181 MFIEAMADAAVIQGMPRAQAYRFAAQAVLGSAKMVLESKSHPGELKDMVCSPGGTTIEAV 240
           MFIEAMADAAV  GMPR+QAY FAAQAVLGSAKMVLE+  HPGELKDMVCSP GTTI+AV
Sbjct: 181 MFIEAMADAAVAGGMPRSQAYTFAAQAVLGSAKMVLETGKHPGELKDMVCSPAGTTIQAV 240

Query: 241 AVLEERGMRSAVIEAMRKCAQKSKEM 266
            VLEE+GMRS+V EAM KC   S++M
Sbjct: 241 RVLEEKGMRSSVFEAMMKCLDISRKM 266


Lambda     K      H
   0.317    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 231
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 266
Length adjustment: 25
Effective length of query: 241
Effective length of database: 241
Effective search space:    58081
Effective search space used:    58081
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_012742041.1 EUBREC_RS05265 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.16353.in -d ../tmp/NCBI__GCF_000020605.1/orgs.faa -p T > /tmp/gapView.16353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.