Alignments for a candidate for ilvC in Agathobacter rectalis ATCC 33656

Align ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_012742838.1 EUBREC_RS09020 ketol-acid reductoisomerase

Query= BRENDA::D6ERQ9
         (332 letters)



>NCBI__GCF_000020605.1:WP_012742838.1
          Length = 341

 Score =  412 bits (1059), Expect = e-120
 Identities = 202/334 (60%), Positives = 257/334 (76%), Gaps = 4/334 (1%)

Query: 1   MAE--LFYDADADLSIIQGRKVAVIGYGSQGHAHALSLRDSGVDVRVGLHEGSKSKAKAE 58
           MAE  LFY  D +LS+++G+ +A+IGYGSQGHAHAL+L+DSG +V +GL+EGSKS  +AE
Sbjct: 1   MAEPRLFYQDDCNLSLLEGKTIAIIGYGSQGHAHALNLKDSGCNVIIGLYEGSKSWKRAE 60

Query: 59  EQGLRVVPVAEAAAEADVIMILVPDPIQAEVYEKDIKDNLKDGDALFFGHGLNIRYGFIK 118
           EQG +V   AEAA +AD+IMIL+ D +QA++Y+KDI+ NL+ G+ L F HG NI +G IK
Sbjct: 61  EQGFKVYVAAEAAKQADIIMILINDELQADMYKKDIEPNLEPGNMLMFAHGFNIHFGCIK 120

Query: 119 PPAGVDVCMVAPKGPGHLVRRQYEEGRGVPCIAAVEQDATGNAFALALSYAKGIGGTRAG 178
           PP  VDV M+APK PGH VR +Y+ G+G PC+ AVEQDATG A+ LAL+Y  GIGG RAG
Sbjct: 121 PPKDVDVAMIAPKAPGHTVRSEYQAGKGTPCLIAVEQDATGKAWDLALAYGLGIGGARAG 180

Query: 179 VIKTTFTEETETDLFGEQAVLCGGTAALVKAGFETLTEAGYQPEIAYFECLHELKLIVDL 238
           +++TTF  ETETDLFGEQAVLCGG  AL++AGFETL EAGY P  AYFEC+HE+KLIVDL
Sbjct: 181 LLETTFRTETETDLFGEQAVLCGGVCALMQAGFETLCEAGYDPRNAYFECIHEMKLIVDL 240

Query: 239 MYEGGLEKMRWSISETAEWGDYVTGPRIITDATKAEMKKVLAEIQDGTFAKNWMDEYH-- 296
           +Y+ G   MR+SIS TAE+GDYVTGP+I+T  TK  MKK+L++IQDGTFAK ++ +    
Sbjct: 241 IYQSGFAGMRYSISNTAEYGDYVTGPKIVTAETKKAMKKILSDIQDGTFAKEFLLDMSPA 300

Query: 297 GGLKKYNEYKKQDSEHLLETTGKELRKLMSWVDE 330
           G    +   +K  SEH  E  G+E+RKL SW DE
Sbjct: 301 GRQVHFKAMRKLASEHPSEKVGEEIRKLYSWNDE 334


Lambda     K      H
   0.316    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 397
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 341
Length adjustment: 28
Effective length of query: 304
Effective length of database: 313
Effective search space:    95152
Effective search space used:    95152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_012742838.1 EUBREC_RS09020 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.19635.in -d ../tmp/NCBI__GCF_000020605.1/orgs.faa -p T > /tmp/gapView.19635.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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