Alignments for a candidate for ilvE in Agathobacter rectalis ATCC 33656

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_012743205.1 EUBREC_RS10740 branched-chain amino acid aminotransferase

Query= BRENDA::Q8DTW7
         (341 letters)



>NCBI__GCF_000020605.1:WP_012743205.1
          Length = 366

 Score =  361 bits (927), Expect = e-104
 Identities = 177/337 (52%), Positives = 229/337 (67%), Gaps = 2/337 (0%)

Query: 4   DLDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAY 63
           D+DW NL F Y +  + Y+S YKDGKWDDG+LT+D T+ ++E +    Y Q  FEGLKAY
Sbjct: 28  DIDWSNLSFGYQETDYSYVSNYKDGKWDDGQLTKDHTVTLNECAGVFQYAQTCFEGLKAY 87

Query: 64  RTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATL 123
            T+DG +  FRP++NA+RL+ + +RL MP  P D+F+ A ++VV+AN  +VPPYG+GATL
Sbjct: 88  TTEDGRIVCFRPDLNAQRLKDSCERLEMPVFPEDRFVKAVEEVVKANAAWVPPYGSGATL 147

Query: 124 YLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAA 183
           Y+RP ++G   VIGV PADEY F I   PVG YFKGG  P    +  D+DRAAPHGTG  
Sbjct: 148 YIRPYIMGTNAVIGVKPADEYQFRILVTPVGPYFKGGAKPITIRV-SDFDRAAPHGTGHI 206

Query: 184 KVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPLSPSI 243
           K G NYA SL     AH + F++ +YLDPAT TK+EE G ANF  ITKD  F+TP S SI
Sbjct: 207 KAGLNYAMSLHAIVDAHAQGFAENMYLDPATRTKVEETGGANFIFITKDGTFVTPKSDSI 266

Query: 244 LPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGG-VQHGDDFH 302
           LPS+T+ SL+ +AE   G+K    +V  DE+  F E G CGTAAVISP+G  V HG +  
Sbjct: 267 LPSITRRSLMVVAEKYLGLKVEHREVLFDEVKDFAECGLCGTAAVISPVGKIVDHGKEIC 326

Query: 303 VFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKV 339
                 E+GPVT KL D LTGIQ G +  P+GW++++
Sbjct: 327 FPSGMDEMGPVTKKLRDTLTGIQMGHIDGPDGWVHEI 363


Lambda     K      H
   0.319    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 420
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 366
Length adjustment: 29
Effective length of query: 312
Effective length of database: 337
Effective search space:   105144
Effective search space used:   105144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_012743205.1 EUBREC_RS10740 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.31777.in -d ../tmp/NCBI__GCF_000020605.1/orgs.faa -p T > /tmp/gapView.31777.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.