Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate WP_041456726.1 AVA_RS10285 acetolactate synthase small subunit
Query= BRENDA::P9WKJ3
(168 letters)
>NCBI__GCF_000204075.1:WP_041456726.1
Length = 173
Score = 167 bits (424), Expect = 7e-47
Identities = 85/154 (55%), Positives = 121/154 (78%)
Query: 6 HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITK 65
HTLSVLVED+ GVL+R+A+LF+RRGFNIESLAVG+ E SR+T+VV +D +EQ+TK
Sbjct: 3 HTLSVLVEDEAGVLSRIASLFARRGFNIESLAVGSGEEGGVSRITMVVPGDDRVIEQLTK 62
Query: 66 QLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTV 125
QL KL+NV+K+ + + V REL L+KV A + +RS+VIE +FRA V+DV+ +SLT+
Sbjct: 63 QLYKLVNVLKVQDITETPCVERELMLLKVNATSSNRSEVIELAQIFRARVVDVAEDSLTL 122
Query: 126 EATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159
E G+ GK+ A+++VL+ FGIREIA++G ++L+R
Sbjct: 123 EVVGDPGKMVAIVQVLQKFGIREIARTGKIALTR 156
Lambda K H
0.315 0.131 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 173
Length adjustment: 18
Effective length of query: 150
Effective length of database: 155
Effective search space: 23250
Effective search space used: 23250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)
Align candidate WP_041456726.1 AVA_RS10285 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.16330.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16330.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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