Alignments for a candidate for trpD_1 in Trichormus variabilis ATCC 29413

Align Anthranilate synthase component 2; AS; ASII; EC 4.1.3.27; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component (uncharacterized)
to candidate WP_041456890.1 AVA_RS17560 aminodeoxychorismate synthase component I

Query= curated2:P26923
         (196 letters)



>NCBI__GCF_000204075.1:WP_041456890.1
          Length = 711

 Score =  184 bits (468), Expect = 3e-51
 Identities = 90/189 (47%), Positives = 126/189 (66%), Gaps = 6/189 (3%)

Query: 6   LIIDNYDSFTHNLYQMAGEIMMEMDSADIMVVRNDEVDIDYVRGLDPERIIISPGPGNPI 65
           LIIDNYDS+T NLYQM  E+  E+     +V+ ND++D   ++ L  + I+ISPGPG P 
Sbjct: 4   LIIDNYDSYTFNLYQMIAEVNGELP----LVIHNDKLDWYELKQLVFDNIVISPGPGRPE 59

Query: 66  KREDFGICSEVIGEFTDRPILGVCLGHQGIFHYFGG-VVGYGEPVHGKISEVFHDGSELF 124
             +DFGIC +++  + D P+LGVCLGHQGI HY+GG V+   EP HG++S+V+H G +LF
Sbjct: 60  NLKDFGICQQILQNYLDVPLLGVCLGHQGIGHYYGGKVIHAPEPQHGRLSDVYHSGGDLF 119

Query: 125 RGVPNPFRATRYHSLRCECSGVPEDILVSASAPDGTIMAIRHRQYPVYGLQFHPESAGTP 184
           + +P PF   RYHSL      +P  +   A   DG +M +RHR  P++G+QFHPES  + 
Sbjct: 120 QEIPTPFSVVRYHSL-LVAEELPSCLEKVAWTEDGLVMGLRHRHLPLWGVQFHPESICSE 178

Query: 185 HGRDILENF 193
           +G  +LENF
Sbjct: 179 YGYKLLENF 187


Lambda     K      H
   0.324    0.145    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 452
Number of extensions: 23
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 711
Length adjustment: 30
Effective length of query: 166
Effective length of database: 681
Effective search space:   113046
Effective search space used:   113046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_041456890.1 AVA_RS17560 (aminodeoxychorismate synthase component I)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.26511.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26511.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.