Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_057509305.1 ABB28_RS14510 3-isopropylmalate dehydrogenase
Query= SwissProt::P12010 (366 letters) >NCBI__GCF_001431535.1:WP_057509305.1 Length = 354 Score = 374 bits (961), Expect = e-108 Identities = 198/357 (55%), Positives = 250/357 (70%), Gaps = 7/357 (1%) Query: 1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETL 60 M ++ VLPGDGIGPEV AA+ VL+ V H F IGG AID G PLP TL Sbjct: 1 MHAEIVVLPGDGIGPEVAAAAVAVLEAVATRFNHTFNFNEHDIGGIAIDRHGEPLPASTL 60 Query: 61 DICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPL 120 D CR +DAILLGAVGGPKW A +RPE+GLL +R+ +GL+ANLRPV+ + L ASP+ Sbjct: 61 DACRAADAILLGAVGGPKWSDPNAKVRPEQGLLAIRRALGLYANLRPVRTHEAALGASPI 120 Query: 121 KRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQI 180 K E + VD V+VRELTGG+YFG + + D +Y+ EEIER++ AF+LA+ Sbjct: 121 KAELLRGVDFVVVRELTGGIYFGEKTRT----ADAASDLCSYSVEEIERVLRSAFELARQ 176 Query: 181 RRKKLASVDKANVLESSRMWREIAEETAKK-YPDVELSHMLVDSTSMQLIANPGQFDVIV 239 RR K+ SVDKANVLE+SR+WR++A + +PDV L H LVDS +M L+A P ++DVIV Sbjct: 177 RRGKVTSVDKANVLETSRLWRDVATRLGRDVFPDVALEHQLVDSMAMHLLAKPREYDVIV 236 Query: 240 TENMFGDILSDEASVITGSLGMLPSASL-RSDRFGMYEPVHGSAPDIAGQGKANPLGTVL 298 TENMFGDIL+DEAS++ GSLG+LPSASL + G+YEP+HGSAPDIAG+G ANP T+ Sbjct: 237 TENMFGDILTDEASMLAGSLGLLPSASLGQPGAVGIYEPIHGSAPDIAGKGIANPYATIF 296 Query: 299 SAALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKL 355 SAA++LR+S GLE EAAA+E AV L G T DL A G VST E T ++E+L Sbjct: 297 SAAMLLRHSLGLEAEAAAVEAAVHAALDAGVFTADLAAA-GAAVSTAEATAAVLERL 352 Lambda K H 0.316 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 397 Number of extensions: 18 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 366 Length of database: 354 Length adjustment: 29 Effective length of query: 337 Effective length of database: 325 Effective search space: 109525 Effective search space used: 109525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate WP_057509305.1 ABB28_RS14510 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.16985.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16985.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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