Alignments for a candidate for aroA in Bifidobacterium longum NCC2705

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate WP_065445061.1 BL_RS03415 3-phosphoshikimate 1-carboxyvinyltransferase

Query= BRENDA::P9WPY5
         (450 letters)



>NCBI__GCF_000007525.1:WP_065445061.1
          Length = 445

 Score =  327 bits (837), Expect = 6e-94
 Identities = 200/442 (45%), Positives = 256/442 (57%), Gaps = 29/442 (6%)

Query: 4   WPAPTAPTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQ 63
           WPAP A  P+ ATVTVPGSKS +NR L+LAAL    G    T+ G LRSRDT+LM+ AL+
Sbjct: 9   WPAPLAAQPLNATVTVPGSKSLSNRYLILAAL----GSKPVTLIGLLRSRDTDLMMGALE 64

Query: 64  TLGLRVDGVGSELTVSGRIEPGPGAR------VDCGLAGTVLRFVPPLAALGSVPVTFDG 117
            LG+R D V S    +  + P    R      V CGLAGTV+RFVP LA     PV FDG
Sbjct: 65  ALGVRCD-VDSATDTTVTVTPPVSGRFHGNVNVFCGLAGTVMRFVPGLALFADGPVNFDG 123

Query: 118 DQQARGRPIAPLLDALRELGVAVDGTG----LPFRVRGNGSL--AGGTVAIDASASSQFV 171
           D+QA  RP+ P+LD L +LG  VD  G    LPF +    +L  A   V+ID+S SSQF+
Sbjct: 124 DEQAYARPMKPVLDGLEQLGATVDYHGEVGRLPFTITPPATLPSAQAQVSIDSSGSSQFI 183

Query: 172 SGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDID-DSTPNRWQVRPGPV- 229
           SGLLL ++    GL + HTG   PS PHI MT A +  AG  ++ D +   W V P  + 
Sbjct: 184 SGLLLISSKLPSGLHLAHTGEKTPSLPHIRMTVADVTGAGGAVEADESARTWTVEPRAMQ 243

Query: 230 AARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVV----I 285
              +  +EPDL+NA  FL AA+++GGTVR+  WP  + QP   +   L Q+ A V    I
Sbjct: 244 LPSKVTVEPDLSNAAPFLGAALIAGGTVRVPHWPETTTQPGGLLPGYLEQMGAKVSFPTI 303

Query: 286 HADSSLEVRGPTGYDGFDV-DLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDR 344
                 EV G     G    DL A GE+ PS+AA+   A     + + GI HLRGHET+R
Sbjct: 304 DGVRYCEVTGDGTVHGLGTFDLTAAGEIAPSLAAILVFADKS--TDMVGIGHLRGHETNR 361

Query: 345 LAALSTEINRLGGTCRETPDGLVITATP---LRPGIWRAYADHRMAMAGAIIGLRVAGVE 401
           L AL  EI R+GG   E PDGL I   P   L   +   YADHRMA   A++GLR+  +E
Sbjct: 362 LEALVNEIRRVGGAAEELPDGLRIEPVPAETLHGAVMETYADHRMATFAAMLGLRIPDIE 421

Query: 402 VDDIAATTKTLPEFPRLWAEMV 423
           V ++A T KTLP+F  +W+ M+
Sbjct: 422 VINVATTRKTLPDFVGMWSGML 443


Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 628
Number of extensions: 39
Number of successful extensions: 10
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 445
Length adjustment: 33
Effective length of query: 417
Effective length of database: 412
Effective search space:   171804
Effective search space used:   171804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_065445061.1 BL_RS03415 (3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.19745.in -d ../tmp/NCBI__GCF_000007525.1/orgs.faa -p T > /tmp/gapView.19745.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.