Alignments for a candidate for argB in Echinicola vietnamensis KMM 6221, DSM 17526

Align N-succinylglutamate kinase (EC 2.7.2.-) (characterized)
to candidate Echvi_3850 Echvi_3850 acetylglutamate kinase

Query= reanno::Btheta:352922
         (257 letters)



>FitnessBrowser__Cola:Echvi_3850
          Length = 266

 Score =  264 bits (675), Expect = 1e-75
 Identities = 129/236 (54%), Positives = 173/236 (73%)

Query: 4   KLTVIKVGGKIVEEEATLLQLLNDFAAISGHKVLVHGGGRSATKIAAQLGIESKMVNGRR 63
           K++++K+GG ++++ A L + L  FA + G K+LVHGGG  A+K   QLGIE KMV+GRR
Sbjct: 2   KISIVKIGGNVIDDPAKLQEFLMLFARLEGKKILVHGGGVMASKFGQQLGIEPKMVDGRR 61

Query: 64  ITDAETLKVVTMVYGGLVNKNIVAGLQARGVNALGLTGADMNVIRSVKRPVKEVDYGFVG 123
           ITD  TL VVTMVY G++NK IVA LQ    NA+G TGAD N+IRS KRPVK++DYGFVG
Sbjct: 62  ITDEATLDVVTMVYAGMINKKIVAKLQQLEQNAMGFTGADGNLIRSAKRPVKDIDYGFVG 121

Query: 124 DVEKVDASLLADLIHKGVVPVMAPLTHDGQGNMLNTNADTIAGETAKALSALFDVTLVYC 183
           DV++VD  L+  L+ K VVPV + +THD +GN+LNTNADTIA E A A++    V L +C
Sbjct: 122 DVKEVDTELMEVLLEKDVVPVFSAITHDRKGNLLNTNADTIASEIATAMAVKHTVRLYFC 181

Query: 184 FEKKGVLRDENDDDSVIPEITRAEFEQYVADGVIQGGMIPKLENSFEAINAGVTEV 239
           F K GVL DE++DDS++P+I    +++   D VI  GMIPKL+N+F A++ GV+ V
Sbjct: 182 FNKAGVLIDEHNDDSLVPKINEDIYDELKRDNVIHSGMIPKLDNAFSALHKGVSNV 237


Lambda     K      H
   0.316    0.135    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 232
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 266
Length adjustment: 25
Effective length of query: 232
Effective length of database: 241
Effective search space:    55912
Effective search space used:    55912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_3850 Echvi_3850 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.14633.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14633.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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