Align N-succinylglutamylphosphate reductase (EC 1.2.1.-) (characterized)
to candidate Echvi_3847 Echvi_3847 N-acetyl-gamma-glutamyl-phosphate reductase, common form
Query= reanno::Cola:Echvi_3847
(322 letters)
>FitnessBrowser__Cola:Echvi_3847
Length = 322
Score = 645 bits (1663), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MTKIKTAIIGAAGYTGGELLRILVHHPSCELVYIHSNSQKGKKIDEVHPDLIGDSDLVFT 60
MTKIKTAIIGAAGYTGGELLRILVHHPSCELVYIHSNSQKGKKIDEVHPDLIGDSDLVFT
Sbjct: 1 MTKIKTAIIGAAGYTGGELLRILVHHPSCELVYIHSNSQKGKKIDEVHPDLIGDSDLVFT 60
Query: 61 DEVKTTGLDAVFLGLPHGQAKAFLAENKFDDQTVIIDLSTDFRDESNGFLYGLPEVNASQ 120
DEVKTTGLDAVFLGLPHGQAKAFLAENKFDDQTVIIDLSTDFRDESNGFLYGLPEVNASQ
Sbjct: 61 DEVKTTGLDAVFLGLPHGQAKAFLAENKFDDQTVIIDLSTDFRDESNGFLYGLPEVNASQ 120
Query: 121 TGQAKRIANPGCFATGIQLALAPAIAAGLAKSDIHITGITGSTGAGKKLSETTHFSQRNQ 180
TGQAKRIANPGCFATGIQLALAPAIAAGLAKSDIHITGITGSTGAGKKLSETTHFSQRNQ
Sbjct: 121 TGQAKRIANPGCFATGIQLALAPAIAAGLAKSDIHITGITGSTGAGKKLSETTHFSQRNQ 180
Query: 181 NVSVYKLFTHQHLKEISQTFGQLQTGFDQHLLFVPYRGNFSRGIWVTAYFPFEGSLEEAY 240
NVSVYKLFTHQHLKEISQTFGQLQTGFDQHLLFVPYRGNFSRGIWVTAYFPFEGSLEEAY
Sbjct: 181 NVSVYKLFTHQHLKEISQTFGQLQTGFDQHLLFVPYRGNFSRGIWVTAYFPFEGSLEEAY 240
Query: 241 KIYHDFYQNAAFTHVSEKDIDLKQVVSTNKCIVHLKKEAGQLVIYSAIDNLLKGASGQAV 300
KIYHDFYQNAAFTHVSEKDIDLKQVVSTNKCIVHLKKEAGQLVIYSAIDNLLKGASGQAV
Sbjct: 241 KIYHDFYQNAAFTHVSEKDIDLKQVVSTNKCIVHLKKEAGQLVIYSAIDNLLKGASGQAV 300
Query: 301 QNYNLAFGLNEKEGLRLKSVAF 322
QNYNLAFGLNEKEGLRLKSVAF
Sbjct: 301 QNYNLAFGLNEKEGLRLKSVAF 322
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 481
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 322
Length adjustment: 28
Effective length of query: 294
Effective length of database: 294
Effective search space: 86436
Effective search space used: 86436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Align candidate Echvi_3847 Echvi_3847 (N-acetyl-gamma-glutamyl-phosphate reductase, common form)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.2387.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2387.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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