Alignments for a candidate for gatB in Echinicola vietnamensis KMM 6221, DSM 17526

Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate Echvi_3042 Echvi_3042 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit

Query= SwissProt::Q9RF06
         (475 letters)



>FitnessBrowser__Cola:Echvi_3042
          Length = 487

 Score =  417 bits (1073), Expect = e-121
 Identities = 217/477 (45%), Positives = 312/477 (65%), Gaps = 6/477 (1%)

Query: 3   FETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRA 62
           +E V+GLEVHV+L T SKM++     FG  PN+N +VI L +PG LP VNKRAV++AM+ 
Sbjct: 10  YELVVGLEVHVQLLTKSKMYASDSTEFGNLPNTNISVITLGHPGTLPKVNKRAVEFAMKL 69

Query: 63  AMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDI--EVDGETKRIGITR 120
            +A   EI   + F RKNYFYPD PK YQ++Q   P+   G + I  E  G T+ I +TR
Sbjct: 70  GLACKSEITRHNIFARKNYFYPDLPKGYQLTQDKNPVCVGGTVPITLEKSGVTREIELTR 129

Query: 121 LHMEEDAGKSTH-KGEY-SLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTG 178
           +HMEEDAGKS H  GE  +LVD NR G PL+EIV+EP IR+ +EAY ++ ++R +++Y  
Sbjct: 130 IHMEEDAGKSMHLAGEVDTLVDFNRAGVPLLEIVTEPCIRASEEAYQFMSEIRKLVRYLE 189

Query: 179 VSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSG 238
           + D  MEEGS+RCDANIS+R  G  + G K E+KN+NSF  V + +E+E  RQ + +  G
Sbjct: 190 ICDGNMEEGSMRCDANISIRLKGDTELGKKVEVKNMNSFRNVARAIEHEFDRQIDMMEKG 249

Query: 239 GEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDE 298
             I  ETR FD +TG T  MR KE  +DYRYFPEPD+ P+ I D W +++ +++P LP E
Sbjct: 250 ETIISETRTFDATTGLTAGMRTKEDLNDYRYFPEPDLSPVVISDEWLQQISESMPSLPRE 309

Query: 299 RKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVE 358
              ++VN  GLP YDA+VLT +KE++ +FE+      + K  SNW+MG V  YLN+  + 
Sbjct: 310 LHERFVNAFGLPEYDANVLTDSKEIALYFEALCGETNNYKAASNWMMGPVKSYLNELTLH 369

Query: 359 LLDTKLTPENLAGMIKLIEDGTMSSKIA-KKVFPELAAKGGNAK-QIMEDNGLVQISDEA 416
           + D  + P+ LA +I LI++G ++  +A +KV+PE+      +  +I +   L+Q SDE 
Sbjct: 370 IEDFPVRPKQLASLIALIDEGKVNFSVASQKVYPEMIKDPSQSPLEIAQKLNLIQESDEG 429

Query: 417 TLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELD 473
           +L   V   L  NE  V +YK+GK   +G  +GQ+MK SKG+A+P++ N++L + L+
Sbjct: 430 SLKPIVESVLAENEAKVAEYKSGKKGLLGMFMGQVMKKSKGKADPKVANKILTELLE 486


Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 652
Number of extensions: 27
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 487
Length adjustment: 34
Effective length of query: 441
Effective length of database: 453
Effective search space:   199773
Effective search space used:   199773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_3042 Echvi_3042 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.3170.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3170.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.