Align 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 (uncharacterized)
to candidate Echvi_0121 Echvi_0121 3-dehydroquinate synthase
Query= curated2:A6LEZ7 (353 letters) >FitnessBrowser__Cola:Echvi_0121 Length = 345 Score = 272 bits (696), Expect = 8e-78 Identities = 138/345 (40%), Positives = 214/345 (62%), Gaps = 7/345 (2%) Query: 4 QKVVICKDLKSELQDFLSSLKYDKLFILMDTNTKEKCFPLV-EDIPAFQKAPILVMEAGD 62 + ++ + +L+ FL S + KL ++ D+NT + C+PL+ E +P + EAG+ Sbjct: 2 ESIIFSTQIAPDLERFLKSKNFSKLGVITDSNTSQACYPLIREALPLHEH---FAFEAGE 58 Query: 63 MNKGFVSLAQIWTALSNEGASRNSLLVNLGGGMITDMGGFAGATFKRGIRTINIPTTLMA 122 +NK + +IW +++ G R SL++NLGGG+ DMGGF +T+KRG++ INIPTTL++ Sbjct: 59 VNKNLDTCQKIWQWMTDCGFDRKSLIINLGGGVTGDMGGFCASTYKRGVKFINIPTTLLS 118 Query: 123 SVDAAVGGKTGINFNGLKNEVGSFYPPLCVFIDCDFLRTLDRDNILSGYAEMIKHGLISS 182 VDA+VGGK G++FNG KN +G F P V I FL +L + SGYAE++KHGLI + Sbjct: 119 QVDASVGGKLGVDFNGFKNHIGVFNEPEAVIISAAFLSSLPLPELRSGYAEVLKHGLIRN 178 Query: 183 MENYASVMLFDIDTMNYSYLNSLVGQSVAVKERIVEEDPKEQGIRKALNFGHTIGHAFES 242 + S+ L + + ++ ++ +SV +K+ +V +DPKE G+RK LNFGHT+GHA ES Sbjct: 179 ENYFNSLKLQNWEDQRWT---EIIEKSVYIKKDVVTKDPKEDGLRKILNFGHTVGHAVES 235 Query: 243 LSFLKMRPILHGHAVAAGIVSELYLSHKLCGFPMEKLSQVVYYIKEYYPALFFDCTDYDT 302 R +LHG A+A G+++E YLS K P E+L + + E + + D D Sbjct: 236 FYLDTERHLLHGEAIAIGMIAEAYLSQKHIRLPKEELQSITTALLEVFGKVEIPKEDLDA 295 Query: 303 LYELMTHDKKNEGGIINFTLLKNVGDVRINQSVTKEKILESLDFY 347 + +L DKKN+G IN +LLK +G+ N +V+ + I++SL FY Sbjct: 296 IAQLCFQDKKNDGKTINCSLLKKIGECDYNIAVSLDDIIDSLHFY 340 Lambda K H 0.321 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 363 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 353 Length of database: 345 Length adjustment: 29 Effective length of query: 324 Effective length of database: 316 Effective search space: 102384 Effective search space used: 102384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Echvi_0121 Echvi_0121 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))
../bin/blast/fastacmd -i /tmp/list.12798.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12798.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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