Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate Echvi_1810 Echvi_1810 3-dehydroquinate dehydratase, type II
Query= BRENDA::A1SZA3
(149 letters)
>FitnessBrowser__Cola:Echvi_1810
Length = 139
Score = 146 bits (369), Expect = 1e-40
Identities = 69/136 (50%), Positives = 97/136 (71%), Gaps = 2/136 (1%)
Query: 5 IKLLVLNGPNLNLLGQREPEVYGSKTLDDIIKALTDEAALQNVALSHLQSNREYELIEKI 64
+K+L++NGPNLNLLG+REPE+YGSK+ +D L E N++LS+ QSN E EL+ KI
Sbjct: 1 MKILIINGPNLNLLGKREPEIYGSKSFEDFFGEL--ETTFSNISLSYYQSNVEGELVNKI 58
Query: 65 HDAFEKIDFIIINPAAFTHTSVALRDALLGVNIPFIEVHLSNVHARESFRHHSYLSDIAQ 124
H+ D I++N A+THTSVA+ DA+ GV P +E+H+SN++ RE+FRH S +S
Sbjct: 59 HEVGFTYDAILLNAGAYTHTSVAISDAIAGVTTPVMEIHISNIYKRETFRHKSIISKECI 118
Query: 125 GVICGLGAKGYSFALQ 140
G+I GLG KGY+ +Q
Sbjct: 119 GMIAGLGLKGYALGIQ 134
Lambda K H
0.321 0.137 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 139
Length adjustment: 16
Effective length of query: 133
Effective length of database: 123
Effective search space: 16359
Effective search space used: 16359
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)
Align candidate Echvi_1810 Echvi_1810 (3-dehydroquinate dehydratase, type II)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.27697.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27697.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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