Alignments for a candidate for aroG in Echinicola vietnamensis KMM 6221, DSM 17526

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate Echvi_2512 Echvi_2512 phospho-2-dehydro-3-deoxyheptonate aldolase

Query= BRENDA::Q9WYH8
         (338 letters)



>FitnessBrowser__Cola:Echvi_2512
          Length = 339

 Score =  280 bits (716), Expect = 4e-80
 Identities = 145/329 (44%), Positives = 209/329 (63%), Gaps = 2/329 (0%)

Query: 1   MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVE 60
           MI+ +K   TE    +++K       K      Q+ T +  IG   + +  KF   + ++
Sbjct: 1   MIIQVKQDITEVQKERLIKEINQIGYKITEVITQKGTYLVGIGSAEFDIR-KFGHHEGIQ 59

Query: 61  SVVRVLKPYKLVSREFHPEDTVIDLGD-VKIGNGYFTIIAGPCSVEGREMLMETAHFLSE 119
            +  V   YKLVSR++    T IDLGD V I  G   ++AGPCS+E  E +++    L  
Sbjct: 60  DIHIVSDAYKLVSRKWKVNPTSIDLGDGVYIKEGDMAVMAGPCSIESEEQIVKVIDHLKA 119

Query: 120 LGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYAD 179
             +K++RGG YKPR+SPY+F+GLG +GL+   E A K G+ ++TE +    + ++ +Y D
Sbjct: 120 NNIKIMRGGVYKPRSSPYAFRGLGIEGLKLWHELASKAGIKIITEVMQVSQIEEMMDYVD 179

Query: 180 IIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGI 239
           + Q+GARN QNF LL + G  +KPV++KRG   TIEE L SAEY+ + GN K+ILCERGI
Sbjct: 180 VFQVGARNTQNFNLLDELGKVDKPVMIKRGISGTIEELLQSAEYVFSGGNEKLILCERGI 239

Query: 240 RTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV 299
           RT+EKATRNTLD++AVP+++ +SHLP++VDPSH  G R  V  ++ A +  GA GII E 
Sbjct: 240 RTYEKATRNTLDLNAVPVLKDKSHLPVVVDPSHGIGIRKFVHQMALAGVMAGADGIIYET 299

Query: 300 HPEPEKALSDGKQSLDFELFKELVQEMKK 328
           H  PEKA SDG+Q+LDF    +L  +++K
Sbjct: 300 HEIPEKAYSDGQQTLDFAQSSQLASQIRK 328


Lambda     K      H
   0.318    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 326
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 339
Length adjustment: 28
Effective length of query: 310
Effective length of database: 311
Effective search space:    96410
Effective search space used:    96410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_2512 Echvi_2512 (phospho-2-dehydro-3-deoxyheptonate aldolase)
to HMM TIGR01361 (aroF: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.6168.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6168.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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