Alignments for a candidate for cysK in Echinicola vietnamensis KMM 6221, DSM 17526

Align S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) (EC 2.5.1.144); cysteine synthase (EC 2.5.1.47) (characterized)
to candidate Echvi_0220 Echvi_0220 cysteine synthase B

Query= BRENDA::P29848
         (303 letters)



>FitnessBrowser__Cola:Echvi_0220
          Length = 292

 Score =  315 bits (807), Expect = 8e-91
 Identities = 159/290 (54%), Positives = 210/290 (72%)

Query: 4   LEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 63
           L + IGNTPLV+L+ +  +   +I+ KLEG NP GSVKDRAA SMI  A  RG++K GD 
Sbjct: 3   LFELIGNTPLVELEHIPTNPNVKIYCKLEGQNPGGSVKDRAAYSMIKRAMDRGDLKQGDR 62

Query: 64  LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGAR 123
           ++EATSGNTGIALAMIA + G  M L+MPDN ++ER  +M AYGA++IL    + +E +R
Sbjct: 63  VVEATSGNTGIALAMIAKVLGVEMTLIMPDNSTRERVVSMEAYGAKVILTPAAKTIEYSR 122

Query: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
            LA  M++     +L+QF NPDN  AHY  TGPEI R T+G ITHFVS+MGTTGTI GVS
Sbjct: 123 TLAEEMAKNEGYYILNQFANPDNYQAHYEGTGPEIMRDTNGEITHFVSAMGTTGTIMGVS 182

Query: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAENTMRE 243
           R+L+EQ+  V IVG QP +GSSIPGIRRW  E++P I++AS VD+++D+ Q +A    R 
Sbjct: 183 RYLKEQKPAVQIVGTQPTDGSSIPGIRRWSPEFLPKIYDASRVDQIIDVSQEEATEMTRR 242

Query: 244 LAVREGIFCGVSSGGAVAGALRVARATPGAIVVAIICDRGDRYLSTGVFG 293
           +A  EGI  G+SSGGA+  A+++A +    ++V I CDRGDRYLS+ +FG
Sbjct: 243 MAKEEGILAGMSSGGALHAAVKLAESLDSGVIVCITCDRGDRYLSSDLFG 292


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 306
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 292
Length adjustment: 26
Effective length of query: 277
Effective length of database: 266
Effective search space:    73682
Effective search space used:    73682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate Echvi_0220 Echvi_0220 (cysteine synthase B)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.17417.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17417.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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