Alignments for a candidate for hisC in Echinicola vietnamensis KMM 6221, DSM 17526

Align histidinol-phosphate aminotransferase (EC 2.6.1.9) (characterized)
to candidate Echvi_2458 Echvi_2458 histidinol-phosphate aminotransferase

Query= reanno::Btheta:349730
         (346 letters)



>FitnessBrowser__Cola:Echvi_2458
          Length = 354

 Score =  357 bits (916), Expect = e-103
 Identities = 178/345 (51%), Positives = 246/345 (71%), Gaps = 5/345 (1%)

Query: 4   LQELTRPNIWKLKPYSSARDEYKGAVASVFLDANENPYNL----PHNRYPDPMQWELKTL 59
           L +L RP+I +LKPYSSARDEY G    VFLDANENP+        NRYPDP Q  LK  
Sbjct: 5   LNKLLRPHIAQLKPYSSARDEYTGK-EGVFLDANENPFGSITAESFNRYPDPYQHALKEK 63

Query: 60  LSKIKKVSPQHIFLGNGSDEAIDLVFRAFCEPEKDNVVAIDPTYGMYQVCADVNNVEYRK 119
           +S IK+V  + IF+GNGSDEAIDL+ RAFC P KDN++ + PTYGMY+V AD+N++  ++
Sbjct: 64  ISAIKQVPVEQIFIGNGSDEAIDLLMRAFCRPGKDNIIILPPTYGMYEVSADINDISIKR 123

Query: 120 VLLDENFQFSAEKLLAATDERTKLIFLCSPNNPTGNDLLRSEIEKILREFEGLVILDEAY 179
           V L  +FQ   + +L A DE TK+IF+CSPNNP+GN + R +I KI+  F+GLV++DEAY
Sbjct: 124 VNLSADFQLRPDAILEAVDENTKIIFICSPNNPSGNKVRRKDILKIIVGFDGLVVVDEAY 183

Query: 180 NDFSEAPSFLEELDKYPNLVVFQTFSKAWGCAAIRLGMAFASEAIIGILSKIKYPYNVNQ 239
            DFS+ PSF  EL ++PNL+V QTFSKAWG AA+RLGMAFAS  II IL+KIK PYN++ 
Sbjct: 184 IDFSDEPSFTAELPQHPNLLVMQTFSKAWGLAALRLGMAFASLPIIRILNKIKPPYNISG 243

Query: 240 LTQQQAIAMLHKYYEIERWIKTLKEERDYLEEEFAKLSCTVRMYPSDSNFFLAKVTDAVK 299
           LTQ+  +  L    ++++ +K + +ERDYL    +K+    +++P+ +NF L +V  A +
Sbjct: 244 LTQETVLKALQDTSKMKQMVKEMLQERDYLLHALSKMDGIKKIHPTHANFVLVEVPAAKE 303

Query: 300 IYNYLVGEGIIVRNRHSISLCCNCLRVTVGTRVENNTLLAALKKY 344
            Y++L+ + IIVR+R  + LC  CLR++VGTR EN+ L+  L ++
Sbjct: 304 TYDHLIEQQIIVRDRSKVVLCDQCLRISVGTREENDQLIGKLSEF 348


Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 369
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 354
Length adjustment: 29
Effective length of query: 317
Effective length of database: 325
Effective search space:   103025
Effective search space used:   103025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_2458 Echvi_2458 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.24807.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24807.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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