Alignments for a candidate for hisD in Echinicola vietnamensis KMM 6221, DSM 17526

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate Echvi_2459 Echvi_2459 histidinol dehydrogenase

Query= BRENDA::G7IKX3
         (478 letters)



>FitnessBrowser__Cola:Echvi_2459
          Length = 429

 Score =  400 bits (1028), Expect = e-116
 Identities = 216/429 (50%), Positives = 294/429 (68%), Gaps = 5/429 (1%)

Query: 48  LSNLTQTELLSLKSRPRIDFSSVFDIVNPIVDDVHAHGDAAVKQYTSKFDKVDLENIVEL 107
           ++N TQ+E     +RP      +  IV PI+  V   GD A+K++  ++D V+++N++  
Sbjct: 4   ITNPTQSEWQKELARPVQKMKDIQKIVKPIMRKVSRQGDKALKKFALEYDHVEIDNLLVS 63

Query: 108 VSDLPDPV--LDPAIKEAFDVAYSNIYAFHAAQKSPEKSVENMKGVQCKRVARSINSVGL 165
             ++ +    +D ++K A   A  NI  FH AQ++ + S+E M+GV C R +  I  VGL
Sbjct: 64  RDEINEAYEQVDESLKSAIQQAKVNIEKFHKAQQTEDLSMEVMEGVTCMRRSVPIQKVGL 123

Query: 166 YVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHLLKAG 225
           Y+PGGTA L ST LML +PA IAGC+ IVL  PP ++G     +LY A   G+  ++KAG
Sbjct: 124 YIPGGTAPLFSTVLMLGIPANIAGCEEIVLCTPPNKEGKIHPAILYTANLIGIDKIVKAG 183

Query: 226 GAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLVIADK 285
           GAQAI+A+ +GTE+ P+V KIFGPGNQYVTAAK +   ++  ++IDMPAGPSEVLV AD+
Sbjct: 184 GAQAIAALTYGTESVPQVAKIFGPGNQYVTAAKQLA--TKKGIAIDMPAGPSEVLVYADE 241

Query: 286 HAIPSHVAADLLSQAEHGPDSQVVLVIAGDGVDQNAIQEEVSKQCQSLPRGEFAAKALSH 345
            A+P+ VAADLLSQAEHG DSQV+LV     V +  ++E V KQ   LPR + A KAL +
Sbjct: 242 SAVPAFVAADLLSQAEHGIDSQVILVATASKVAKKTLKE-VDKQLAKLPRKDIAKKALEN 300

Query: 346 SFIVHARDMLEAITFSNMYAPEHLIINVKDAEKWESFIENAGSVFLGSWTPESVGDYASG 405
           S  V   +  +AI   N YAPEHLIINV + ++  + I NAGSVF+G++TPES GDYASG
Sbjct: 301 SIAVVMGNQEKAIALINDYAPEHLIINVANEDEVVANIVNAGSVFIGNFTPESAGDYASG 360

Query: 406 TNHVLPTYGYARMYSGVSLDSFLKYITVQSLTEEGLRKLGPYVETMAEVEGLEAHKRAVT 465
           TNH LPTYG+AR YSGVSLDSF+K IT Q +TE+GL+ LGP +E MA  E L+AHK AV+
Sbjct: 361 TNHTLPTYGFARNYSGVSLDSFVKKITYQKITEKGLQNLGPTIEVMAGNELLDAHKNAVS 420

Query: 466 LRLQDIEAR 474
           +RL+ ++ +
Sbjct: 421 IRLKYLKEK 429


Lambda     K      H
   0.316    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 507
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 429
Length adjustment: 33
Effective length of query: 445
Effective length of database: 396
Effective search space:   176220
Effective search space used:   176220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_2459 Echvi_2459 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.6708.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6708.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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