Alignments for a candidate for hisG in Echinicola vietnamensis KMM 6221, DSM 17526

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate Echvi_2460 Echvi_2460 ATP phosphoribosyltransferase

Query= BRENDA::Q5HSJ4
         (299 letters)



>FitnessBrowser__Cola:Echvi_2460
          Length = 286

 Score =  270 bits (690), Expect = 3e-77
 Identities = 142/292 (48%), Positives = 198/292 (67%), Gaps = 11/292 (3%)

Query: 7   LRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFSTNLPIDILRVRDDDIPGLIFDGV 66
           +RIA+QKSGRLS++S+ L+ ECG+K +     L + STN PI+ L +RDDDIPG + DGV
Sbjct: 5   IRIAVQKSGRLSEDSLSLIKECGIKFYNGTGKLKSTSTNFPIEFLYLRDDDIPGYVADGV 64

Query: 67  VDLGIIGENVLEENELERQSLGENPSYKLLKKLDFGYCRLSLALPQENKFQNLKDFEGLR 126
            DLGI+GEN L E +          S  +LKKL F  CRLSLA+P+  ++  L  FEG  
Sbjct: 65  ADLGIVGENELVEKD---------KSVDVLKKLGFSKCRLSLAIPKSQEYPGLSYFEGKN 115

Query: 127 IATSYPQLLKRFMKENGINYKNCTLTGSVEVAPRANLADAICDLVSSGATLQANNLKEVK 186
           IATSY ++L  ++K N IN +   ++GSVE+AP   LA+ ICD+VSSG+TL  N LKEV+
Sbjct: 116 IATSYTKILGDYLKANHINAEIHEISGSVEIAPSIGLAEGICDIVSSGSTLMMNGLKEVE 175

Query: 187 VIYESRACLIQKENALSKEKQALVDKIMLRVAGVMQARESKYIMLHAPKEKLDKIQALLP 246
            I++S A LI     L+ EK A+V+K++ R+  V   + +KY++L+AP E LDKI +L+P
Sbjct: 176 EIFKSEAVLI-SHKGLNSEKMAIVEKLLFRINAVQTGKSNKYVLLNAPNESLDKIISLIP 234

Query: 247 GVERPTILPLAHDEKNVALHMVSKENLFWETMEALKEEGASSILVLPIEKML 298
           G+  PTILPLA +  + ++H V  E+ FWE +E L+  GA  ILV+PIEKM+
Sbjct: 235 GMRSPTILPLAQEGWS-SVHSVLSEDQFWENIEELRAAGAEGILVVPIEKMV 285


Lambda     K      H
   0.317    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 251
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 286
Length adjustment: 26
Effective length of query: 273
Effective length of database: 260
Effective search space:    70980
Effective search space used:    70980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate Echvi_2460 Echvi_2460 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.9141.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9141.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.