Alignments for a candidate for hisH in Echinicola vietnamensis KMM 6221, DSM 17526

Align IGP synthase glutamine amidotransferase subunit; EC 2.4.2.- (characterized)
to candidate Echvi_2514 Echvi_2514 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Query= CharProtDB::CH_024511
         (196 letters)



>FitnessBrowser__Cola:Echvi_2514
          Length = 194

 Score =  144 bits (363), Expect = 1e-39
 Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 4/197 (2%)

Query: 1   MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRER 60
           M+V I+     N+ SV  A+ R G    ++ D + +  ADK+  PG G A +AM  +RER
Sbjct: 1   MDVAIIKYNSGNVLSVLYALERLGINANLTDDVEEIKKADKVIFPGQGEASSAMRYLRER 60

Query: 61  ELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120
            L  LIK   QP  GICLG QLL   SEE N  + LG+    V K       +PH+GWN 
Sbjct: 61  NLDQLIKDLKQPFFGICLGQQLLCEYSEE-NDTECLGVFPVKVRKFPPAD-KVPHVGWNS 118

Query: 121 VYPQAGNRLFQGIEDGAYFYFVHSYAMPVNP-WTIAQCNYGEPFTAAVQKDNFYGVQFHP 179
           +    G +L +GI    Y Y+VHSY   ++P +T+A+ +Y E F+A +QKDNFY +Q HP
Sbjct: 119 LQETQG-QLLEGINTHDYVYYVHSYFAEIHPEFTVAKTHYIEDFSALLQKDNFYAMQAHP 177

Query: 180 ERSGAAGAKLLKNFLEM 196
           E+S  +G K+L NFL++
Sbjct: 178 EKSSHSGQKILTNFLKL 194


Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 194
Length adjustment: 20
Effective length of query: 176
Effective length of database: 174
Effective search space:    30624
Effective search space used:    30624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)

Align candidate Echvi_2514 Echvi_2514 (imidazole glycerol phosphate synthase, glutamine amidotransferase subunit)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.10827.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10827.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.