Alignments for a candidate for hisN in Echinicola vietnamensis KMM 6221, DSM 17526

Align Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 (characterized)
to candidate Echvi_2457 Echvi_2457 histidinol-phosphatase

Query= SwissProt::D2QPE6
         (382 letters)



>FitnessBrowser__Cola:Echvi_2457
          Length = 365

 Score =  520 bits (1338), Expect = e-152
 Identities = 257/382 (67%), Positives = 294/382 (76%), Gaps = 17/382 (4%)

Query: 1   MQKIVFIDRDGTLIAEPQPDQQVDSLAKLDFIPKAISAMRKIAEDTTYELVMVTNQDGLG 60
           M+K++FIDRDGT+I EP  D QVDSL KL+F PKAIS +RKIAE+T YELVMVTNQDGLG
Sbjct: 1   MKKVLFIDRDGTIIKEPPVDYQVDSLEKLEFYPKAISNLRKIAEETDYELVMVTNQDGLG 60

Query: 61  TGSFPEDTFWPAHNKMMSTFAGENVNFAAVHIDRHFPHDNSSTRKPGVGMLTQYFEASYD 120
           T SFPEDTFWPA  KM+ T   E V F+A+HID+ F H+N+ TRKP  G+LT Y +  YD
Sbjct: 61  TDSFPEDTFWPAQYKMLKTLEEEGVVFSAIHIDKTFEHENAPTRKPRTGLLTDYLKGDYD 120

Query: 121 LTNSFVIGDRLTDVQLAVNLGAKAILFMPPNGLAAVQSADVSGLTEAMKQAIVLQTGDWD 180
           L +SFVIGDR TDVQLA NLG +AI                  + E   +   L T  WD
Sbjct: 121 LAHSFVIGDRKTDVQLAKNLGTQAIF-----------------IGEEAAEGAALSTTSWD 163

Query: 181 EIYEFLRLPARTALVERNTKETQIRVELNLDGRGRADMHTGLGFFDHMLDQVAKHSGADL 240
           EIYEFLRLP+R   V+R+T ETQI + +NLDG G+  + TGL FFDHML+Q+ KH G DL
Sbjct: 164 EIYEFLRLPSRIGQVKRSTSETQIEIMVNLDGSGKCQIDTGLPFFDHMLEQLGKHGGTDL 223

Query: 241 AIHVNGDLHIDEHHTIEDTALALGEAYRRALGDKRGISRYGFLLPMDEALAQVGIDFSGR 300
            I VNGDLHIDEHHTIEDTALALGEAY +ALGDK+GI RYGFLLPMD+ LAQV IDF GR
Sbjct: 224 DIKVNGDLHIDEHHTIEDTALALGEAYLKALGDKKGIYRYGFLLPMDDVLAQVAIDFGGR 283

Query: 301 PWLVWDAEFKREKIGDMPTEMFYHFFKSFSDTALCNLNIKVEGDNEHHKIEAIFKAFAKA 360
           PW++W+AEF REKIGDMPTEMFYHFFKSFSDTA CNLNIK EG NEHHKIEAIFK  A+A
Sbjct: 284 PWMMWEAEFNREKIGDMPTEMFYHFFKSFSDTAKCNLNIKAEGANEHHKIEAIFKGLARA 343

Query: 361 IKMAVRRDINELDNLPSTKGVL 382
           IKMAV+RDI  L+ LPSTKGVL
Sbjct: 344 IKMAVKRDIAALNQLPSTKGVL 365


Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 472
Number of extensions: 22
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 365
Length adjustment: 30
Effective length of query: 352
Effective length of database: 335
Effective search space:   117920
Effective search space used:   117920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_2457 Echvi_2457 (histidinol-phosphatase)
to HMM TIGR01261 (hisB: histidinol-phosphatase (EC 3.1.3.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.7960.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7960.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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