Alignments for a candidate for prs in Echinicola vietnamensis KMM 6221, DSM 17526

Align Ribose-phosphate pyrophosphokinase; RPPK; EC 2.7.6.1; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase (uncharacterized)
to candidate Echvi_3167 Echvi_3167 ribose-phosphate pyrophosphokinase

Query= curated2:Q8TUT6
         (291 letters)



>FitnessBrowser__Cola:Echvi_3167
          Length = 297

 Score =  138 bits (347), Expect = 2e-37
 Identities = 90/284 (31%), Positives = 149/284 (52%), Gaps = 8/284 (2%)

Query: 11  KLGRRLAEELDAELAPVEEDRFPDGEQIVRVPPEL-DGTVVVVHSMSPPQDENLVKAIIT 69
           KL   +A ++DAE+       FPDGE   R+  ++ D  VV+V ++  P DE L+     
Sbjct: 13  KLTELMATKMDAEVGKATLRNFPDGESYTRILSDVKDKCVVLVCTLHEP-DEKLLPLYFL 71

Query: 70  LDAARENGAEEVIAIVPYMAYSRQDRRFEPGEPVSFRAVARAVSANADALITVD--LHEP 127
              A+  GA     + PY+AY RQD+ F  GE V+     + +S  AD++ TVD  LH  
Sbjct: 72  SHTAKSLGAMCTCLVAPYLAYMRQDKVFNEGEGVTSGFFGKLISGFADSITTVDPHLHRI 131

Query: 128 GTL-KYFDVPAENVSAAEELGKYLAERFEGEDLVVIGPDEGARELAREVASICGVEYDHL 186
            +L + + +P + + AA+ +  ++ E  E    V+IGPD  + +   EVA   G  +  L
Sbjct: 132 SSLGEVYQIPNKVIHAADAISDWIKENIENP--VLIGPDSESEQWVSEVAKNAGAPFIVL 189

Query: 187 EKKRLSGDEVEIHPKELDV-EGRTVVLVDDMIDTGGTMVEAARALRDQGAGTLYAACTHA 245
           +K R    +VE+   ++D+ +  T +LVDD+I T  TM+E  + L+  G         HA
Sbjct: 190 QKMRHGDRDVEVSVPDVDIYKDATPILVDDIISTARTMIETVQHLKKAGMKPPICVGIHA 249

Query: 246 LLTRNAATRLLASGFEDIIATDTVPNPFEKVSVAPPVAEAVENL 289
           + + N+   LL SG E I+  +T+P+P   + ++  +A+ V+ L
Sbjct: 250 VFSGNSYKDLLGSGVEKIVTCNTIPHPSNGIDLSDIMAKEVKKL 293


Lambda     K      H
   0.314    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 196
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 297
Length adjustment: 26
Effective length of query: 265
Effective length of database: 271
Effective search space:    71815
Effective search space used:    71815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate Echvi_3167 Echvi_3167 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.25908.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25908.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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