Alignments for a candidate for ilvI in Echinicola vietnamensis KMM 6221, DSM 17526

Align acetohydroxy-acid synthase large subunit (EC 2.2.1.6) (characterized)
to candidate Echvi_2056 Echvi_2056 acetolactate synthase, large subunit, biosynthetic type

Query= metacyc::MONOMER-11900
         (599 letters)



>FitnessBrowser__Cola:Echvi_2056
          Length = 564

 Score =  452 bits (1164), Expect = e-131
 Identities = 241/573 (42%), Positives = 353/573 (61%), Gaps = 21/573 (3%)

Query: 1   MNGAEAMIKALEAEKVEILFGYPGGALLPFYDALH-HSDLI-HLLTRHEQAAAHAADGYA 58
           + GAE +IK+L +E  + +FGYPGGA++P YDAL+ ++D I H+LTRHEQ A HAA GYA
Sbjct: 6   IRGAEIVIKSLVSENCDYIFGYPGGAIMPVYDALYDYADQIKHVLTRHEQGAIHAAQGYA 65

Query: 59  RASGKVGVCIGTSGPGATNLVTGVATAHSDSSPMVALTGQVPTKLIGNDAFQEIDALGLF 118
           R SGKVGVC+ TSGPGATNL+TG+A A  DS+P+V +TGQV + L+G DAFQE D +G  
Sbjct: 66  RVSGKVGVCMATSGPGATNLITGIADALIDSTPLVCITGQVASALLGTDAFQETDVVGFS 125

Query: 119 MPIVKHNFQIQKTCQIPEIFRSAFEIAQTGRPGPVHIDLPKDVQELELDIDKHPIPSKVK 178
           MP  K N Q++K   I       F IA++GRPGPV ID+ KD Q    D +  P    + 
Sbjct: 126 MPGTKWNIQVRKAEDIAPAIAKGFHIARSGRPGPVLIDITKDAQNELADFNYVPC---LG 182

Query: 179 LIGYNPTTIGHPRQIKKAIKLIASAKRPIILAGGGVLLSGANEELLKLVELLNIPVCTTL 238
           +  Y P       +I  A ++I +AKRP +L G GV++  A EEL   ++   IP   TL
Sbjct: 183 IRSYRPYPKVKDSEIAAAAEVINAAKRPYLLFGQGVVIGKAEEELKAFLDKTGIPAACTL 242

Query: 239 MGKGCISENHPLALGMVGMHGTKPANYCLSESDVLISIGCRFSDRITGDIKSFATNAKII 298
           +G G +SE HP  +G +GMHG    N   ++ DVLI++G RF DR+TGD+K +A  AK++
Sbjct: 243 LGSGALSEEHPQFVGKLGMHGNYAPNILTNKCDVLIAVGMRFDDRVTGDLKRYAKQAKVV 302

Query: 299 HIDIDPAEIGKNVNVDVPIVGDAKLILKEVIKQLDYIINKDSKENNDKENISQWIENVNS 358
           H+++D AEI KNV  +V ++G+     KE +  L   +NK S +        +W+    +
Sbjct: 303 HLELDNAEINKNVKCEVSVLGNC----KESLPMLTEKVNKASHD--------EWLAEFRT 350

Query: 359 L-KKSSIPVMDYDDIPIKPQKIVKELMAVIDDLNINKNTIITTDVGQNQMWMAHYFKTQT 417
           L +K    V+  D +P K    + E++  I+D     + ++ TDVGQ+QM    YFK +T
Sbjct: 351 LEEKEKSAVVSLDLLPTKTGLTMGEVIRYINDYK-KDDAVLVTDVGQHQMIAWRYFKFKT 409

Query: 418 PRSFLSSGGLGTMGFGFPSAIGAKVAKPDSKVICITGDGGFMMNCQELGTIAEYNIPVVI 477
            R+ ++SGGLGTMGF  P+A+GA++A  + +V+C+ GDGG  M  QELGTI +   PV +
Sbjct: 410 TRTQVTSGGLGTMGFSLPAALGAQLADLNRQVVCVVGDGGIQMTVQELGTIMQTRSPVKV 469

Query: 478 CIFDNRTLGMVYQWQNLFYGKRQCSVNFGGAPDFIKLAESYGIKARRIESPNEINEALKE 537
            + +N  LGMV QWQ LF+ KR         PDFIK+AE+Y +KA ++    ++++A+ +
Sbjct: 470 VLLNNNFLGMVRQWQQLFFDKRYSFTELDN-PDFIKIAEAYNMKATKVTERGDLSDAVAD 528

Query: 538 AINCDEPYLLDFAID-PSSALSMVPPGAKLTNI 569
            +  + PY L+  ++   +   M+P G  +  +
Sbjct: 529 MLTHEGPYFLEVVVEKEDNVFPMIPTGCSVEEV 561


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 801
Number of extensions: 43
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 564
Length adjustment: 36
Effective length of query: 563
Effective length of database: 528
Effective search space:   297264
Effective search space used:   297264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate Echvi_2056 Echvi_2056 (acetolactate synthase, large subunit, biosynthetic type)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.8312.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8312.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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