Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate Echvi_2059 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Query= uniprot:A0A1X9Z7T5 (470 letters) >FitnessBrowser__Cola:Echvi_2059 Length = 465 Score = 657 bits (1695), Expect = 0.0 Identities = 318/462 (68%), Positives = 376/462 (81%) Query: 3 KTLVEKIWDAHVVKSEEGFPDILYIDTHLIHEVTSPQAFDGLRKRGLPVFRPKQTVATAD 62 KTL +K+WD HVVKS G PD+ +ID H IHEVTSP AF L RG V P++TVAT D Sbjct: 4 KTLFDKVWDEHVVKSVPGGPDVFFIDKHFIHEVTSPVAFLNLENRGNNVLFPERTVATPD 63 Query: 63 HNVPTLNQLLPIKEELSRYQVDMLTKNCAEFGVELYGLGHPFQGIVHVIGPELGITLPGK 122 HNVPT++Q IK++LSR QV+ L NC+++G+EL+ LG GIVHVIGPELGIT PG Sbjct: 64 HNVPTIDQDKTIKDKLSRMQVEKLRDNCSKYGIELHDLGTDHHGIVHVIGPELGITQPGM 123 Query: 123 TMVCGDSHTSTHGAFGAIAFGIGTSQVEQVFATQCLLQSKPKTMKIEVNGELGKGVGAKD 182 T+VCGDSHTSTHGAFGAIAFGIGTS+VE VFA+QC++QSKPK M+I VNGELGKGV +KD Sbjct: 124 TIVCGDSHTSTHGAFGAIAFGIGTSEVEMVFASQCIMQSKPKRMRITVNGELGKGVTSKD 183 Query: 183 IILYIIAKISAAGGTGYFIEYAGSAIEALSMEARMTICNMSIEMGARGGLIAPDQTTFDY 242 IILYII+KISA+GGTGYFIEYAGSAI++LSMEARMTICNMSIEMGARGGLIAPD+ TFDY Sbjct: 184 IILYIISKISASGGTGYFIEYAGSAIQSLSMEARMTICNMSIEMGARGGLIAPDEVTFDY 243 Query: 243 IKGREFAPAGEEWDKALAYWKTLYSDADAKFDSVLTFDAADIAPMITYGTNPGMGMGIQE 302 +KG+E AP GE+WDKA+ YWK+L +D A+FD T+DA DI PMITYGTNPGMG+ I++ Sbjct: 244 LKGKEHAPKGEDWDKAVEYWKSLRTDEGAEFDLEYTYDAEDIEPMITYGTNPGMGIKIKD 303 Query: 303 HIPATGAQPEKEKLSYQKALDYMGFDDDSSLIGKPVDYVFIGSCTNSRIEDLREVADFVK 362 IP T K +Y K+LDYMGF + GK +DYVF+GSCTN RIED+R VA+FVK Sbjct: 304 IIPTTEGMEGSNKKTYLKSLDYMGFQPGEPIKGKKIDYVFVGSCTNGRIEDIRAVAEFVK 363 Query: 363 DKRKADNVTVWIVPGSKQVEQQAKNEGLDKIFEAAGFQLREPGCSACLGMNEDKIPAGKY 422 K+KADN+T WIVPGS++VE QA EGL I E AGF+LR+PGCSACL MN+DKIPAGKY Sbjct: 364 GKKKADNITAWIVPGSREVESQAIEEGLVSILEEAGFKLRQPGCSACLAMNDDKIPAGKY 423 Query: 423 CVSTSNRNFEGRQGQNARTLLASPLTAAAAAVTGKITDVRDL 464 VSTSNRNFEGRQG ARTLLASPLT AA A+TG++ D R++ Sbjct: 424 AVSTSNRNFEGRQGPGARTLLASPLTVAAVAITGEVADPREV 465 Lambda K H 0.317 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 724 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 470 Length of database: 465 Length adjustment: 33 Effective length of query: 437 Effective length of database: 432 Effective search space: 188784 Effective search space used: 188784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Echvi_2059 Echvi_2059 (3-isopropylmalate dehydratase, large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.11637.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11637.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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