Alignments for a candidate for leuC in Echinicola vietnamensis KMM 6221, DSM 17526

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate Echvi_2059 Echvi_2059 3-isopropylmalate dehydratase, large subunit

Query= uniprot:A0A1X9Z7T5
         (470 letters)



>FitnessBrowser__Cola:Echvi_2059
          Length = 465

 Score =  657 bits (1695), Expect = 0.0
 Identities = 318/462 (68%), Positives = 376/462 (81%)

Query: 3   KTLVEKIWDAHVVKSEEGFPDILYIDTHLIHEVTSPQAFDGLRKRGLPVFRPKQTVATAD 62
           KTL +K+WD HVVKS  G PD+ +ID H IHEVTSP AF  L  RG  V  P++TVAT D
Sbjct: 4   KTLFDKVWDEHVVKSVPGGPDVFFIDKHFIHEVTSPVAFLNLENRGNNVLFPERTVATPD 63

Query: 63  HNVPTLNQLLPIKEELSRYQVDMLTKNCAEFGVELYGLGHPFQGIVHVIGPELGITLPGK 122
           HNVPT++Q   IK++LSR QV+ L  NC+++G+EL+ LG    GIVHVIGPELGIT PG 
Sbjct: 64  HNVPTIDQDKTIKDKLSRMQVEKLRDNCSKYGIELHDLGTDHHGIVHVIGPELGITQPGM 123

Query: 123 TMVCGDSHTSTHGAFGAIAFGIGTSQVEQVFATQCLLQSKPKTMKIEVNGELGKGVGAKD 182
           T+VCGDSHTSTHGAFGAIAFGIGTS+VE VFA+QC++QSKPK M+I VNGELGKGV +KD
Sbjct: 124 TIVCGDSHTSTHGAFGAIAFGIGTSEVEMVFASQCIMQSKPKRMRITVNGELGKGVTSKD 183

Query: 183 IILYIIAKISAAGGTGYFIEYAGSAIEALSMEARMTICNMSIEMGARGGLIAPDQTTFDY 242
           IILYII+KISA+GGTGYFIEYAGSAI++LSMEARMTICNMSIEMGARGGLIAPD+ TFDY
Sbjct: 184 IILYIISKISASGGTGYFIEYAGSAIQSLSMEARMTICNMSIEMGARGGLIAPDEVTFDY 243

Query: 243 IKGREFAPAGEEWDKALAYWKTLYSDADAKFDSVLTFDAADIAPMITYGTNPGMGMGIQE 302
           +KG+E AP GE+WDKA+ YWK+L +D  A+FD   T+DA DI PMITYGTNPGMG+ I++
Sbjct: 244 LKGKEHAPKGEDWDKAVEYWKSLRTDEGAEFDLEYTYDAEDIEPMITYGTNPGMGIKIKD 303

Query: 303 HIPATGAQPEKEKLSYQKALDYMGFDDDSSLIGKPVDYVFIGSCTNSRIEDLREVADFVK 362
            IP T       K +Y K+LDYMGF     + GK +DYVF+GSCTN RIED+R VA+FVK
Sbjct: 304 IIPTTEGMEGSNKKTYLKSLDYMGFQPGEPIKGKKIDYVFVGSCTNGRIEDIRAVAEFVK 363

Query: 363 DKRKADNVTVWIVPGSKQVEQQAKNEGLDKIFEAAGFQLREPGCSACLGMNEDKIPAGKY 422
            K+KADN+T WIVPGS++VE QA  EGL  I E AGF+LR+PGCSACL MN+DKIPAGKY
Sbjct: 364 GKKKADNITAWIVPGSREVESQAIEEGLVSILEEAGFKLRQPGCSACLAMNDDKIPAGKY 423

Query: 423 CVSTSNRNFEGRQGQNARTLLASPLTAAAAAVTGKITDVRDL 464
            VSTSNRNFEGRQG  ARTLLASPLT AA A+TG++ D R++
Sbjct: 424 AVSTSNRNFEGRQGPGARTLLASPLTVAAVAITGEVADPREV 465


Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 724
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 465
Length adjustment: 33
Effective length of query: 437
Effective length of database: 432
Effective search space:   188784
Effective search space used:   188784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_2059 Echvi_2059 (3-isopropylmalate dehydratase, large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.32653.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32653.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.