Alignments for a candidate for dapA in Echinicola vietnamensis KMM 6221, DSM 17526

Align 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 (characterized)
to candidate Echvi_3959 Echvi_3959 dihydrodipicolinate synthase

Query= SwissProt::Q9JZR4
         (291 letters)



>FitnessBrowser__Cola:Echvi_3959
          Length = 286

 Score =  221 bits (562), Expect = 2e-62
 Identities = 116/279 (41%), Positives = 175/279 (62%), Gaps = 4/279 (1%)

Query: 4   GSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAV 63
           G+ VAL+TP +++G+I Y  L  +I+  I+ G D +V +GTTGE++T+S +E   ++ A 
Sbjct: 6   GTGVALVTPFDEEGNIDYNGLDKVIEHVIQGGADYLVVMGTTGEASTMSRKEKHDILAAA 65

Query: 64  VKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIA 123
           VK    R+P++ G GANNT  AI      + +G    LSV PYYNKP+QEGIYQH+  +A
Sbjct: 66  VKTNNGRLPIVYGIGANNTQAAIDEIDETDLSGVAALLSVSPYYNKPTQEGIYQHYIKVA 125

Query: 124 EATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELINRAPEGFVV 183
           +A+ +P+I+YNVPGRT+ ++T  T LRL+E P I+GVKEASG++   +++I + P  F++
Sbjct: 126 DASPVPIILYNVPGRTMSNITAATTLRLSEHPKIIGVKEASGDMVQCMDIIRKKPSDFLL 185

Query: 184 LSGDDHTALPFMLCGGHGVITVAANAAPKLFADMCRAALQGDIALARELNDRLIPIYDTM 243
           +SGDD         GGHG I+V ANA P +F  +C  + +  +A       RL+ I   M
Sbjct: 186 ISGDDMLTTSLKAIGGHGAISVLANAYPDIFKTICHGSAEESLA----ATFRLLDINAWM 241

Query: 244 FCEPSPAAPKWAVSALGRCEPHVRLPLVPLTENGQAKVR 282
           + E +P   K  +  +G C   VRLPL+  TE+   K++
Sbjct: 242 YVESNPVGVKNLLKHMGVCGDQVRLPLLRATESLDKKIK 280


Lambda     K      H
   0.317    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 226
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 286
Length adjustment: 26
Effective length of query: 265
Effective length of database: 260
Effective search space:    68900
Effective search space used:    68900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate Echvi_3959 Echvi_3959 (dihydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.29377.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29377.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.