Alignments for a candidate for lysA in Echinicola vietnamensis KMM 6221, DSM 17526

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate Echvi_1295 Echvi_1295 diaminopimelate decarboxylase

Query= reanno::Cola:Echvi_1295
         (410 letters)



>FitnessBrowser__Cola:Echvi_1295
          Length = 410

 Score =  816 bits (2109), Expect = 0.0
 Identities = 410/410 (100%), Positives = 410/410 (100%)

Query: 1   MTIDNQQYQVQGVPLLDIASEYGTPVYVYDGQKILDQVATLQNAFSSVNLKIKYATKALS 60
           MTIDNQQYQVQGVPLLDIASEYGTPVYVYDGQKILDQVATLQNAFSSVNLKIKYATKALS
Sbjct: 1   MTIDNQQYQVQGVPLLDIASEYGTPVYVYDGQKILDQVATLQNAFSSVNLKIKYATKALS 60

Query: 61  NINILKLMKKAGTGVDAVSIEEVKLCLHVGYEPSEIMFTPNCVAFEEIQEAVDLGVMINI 120
           NINILKLMKKAGTGVDAVSIEEVKLCLHVGYEPSEIMFTPNCVAFEEIQEAVDLGVMINI
Sbjct: 61  NINILKLMKKAGTGVDAVSIEEVKLCLHVGYEPSEIMFTPNCVAFEEIQEAVDLGVMINI 120

Query: 121 DNIPMLEHFGTYYGNSVPLCIRLNPHILAGGNAKISVGHIDSKFGISILQLKHVLKIVEV 180
           DNIPMLEHFGTYYGNSVPLCIRLNPHILAGGNAKISVGHIDSKFGISILQLKHVLKIVEV
Sbjct: 121 DNIPMLEHFGTYYGNSVPLCIRLNPHILAGGNAKISVGHIDSKFGISILQLKHVLKIVEV 180

Query: 181 HNLKVAGLHVHTGSDILDAEVFLKGAEILFDAAKEFKDLQFLDFGGGFKVGYKEGDITTD 240
           HNLKVAGLHVHTGSDILDAEVFLKGAEILFDAAKEFKDLQFLDFGGGFKVGYKEGDITTD
Sbjct: 181 HNLKVAGLHVHTGSDILDAEVFLKGAEILFDAAKEFKDLQFLDFGGGFKVGYKEGDITTD 240

Query: 241 MVEVGRKVSAAFKEFCKNYGRELEIWFEPGKFLVSECGYLLVNANVVKSTPASTFIGVDS 300
           MVEVGRKVSAAFKEFCKNYGRELEIWFEPGKFLVSECGYLLVNANVVKSTPASTFIGVDS
Sbjct: 241 MVEVGRKVSAAFKEFCKNYGRELEIWFEPGKFLVSECGYLLVNANVVKSTPASTFIGVDS 300

Query: 301 GLNHLIRPMMYDAYHGVENISRVTGPDRVYTIVGYICETDTIAADRKLKEVKEGDVLAIK 360
           GLNHLIRPMMYDAYHGVENISRVTGPDRVYTIVGYICETDTIAADRKLKEVKEGDVLAIK
Sbjct: 301 GLNHLIRPMMYDAYHGVENISRVTGPDRVYTIVGYICETDTIAADRKLKEVKEGDVLAIK 360

Query: 361 NAGAYGFSMASNYNSRLRPAEVLVLDGKAHLIRARESFEDILRHQIDIGL 410
           NAGAYGFSMASNYNSRLRPAEVLVLDGKAHLIRARESFEDILRHQIDIGL
Sbjct: 361 NAGAYGFSMASNYNSRLRPAEVLVLDGKAHLIRARESFEDILRHQIDIGL 410


Lambda     K      H
   0.320    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 780
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 410
Length adjustment: 31
Effective length of query: 379
Effective length of database: 379
Effective search space:   143641
Effective search space used:   143641
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_1295 Echvi_1295 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.30590.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30590.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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